1 HisKA#1
76-147 aa · 72 aa · 21.6% of protein
Raw token
HisKA:76:0.00000000104:147:72:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C1S61_RS00440
Histidine kinase, Classic
Clostridioides difficile · GCF_022342335
ClassHKTypeClassicLength333 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022342335#C1S61_RS00440Stable P2CS identifier used across views.
GenomeGCF_022342335Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 333 aa (55.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
195-306 aa · 112 aa · 33.6% of protein
Raw token
HATPase_c:195:2.68e-25:306:112:109- Raw architecture: HisKA:76:0.00000000104:147:72:64#HATPase_c:195:2.68e-25:306:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022342335::NZ_POUF01000072.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span172-1174Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC1S61_00475RefSeq proteinWP_238979646.1
Context group ID
GCF_022342335::NZ_POUF01000072.1::G00001Context members
C1S61_RS00440
Partner locus tags
C1S61_RS00440
Partner old locus tags
C1S61_00475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_238979646.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC1S61_RS00440Primary locus identifier stored in the genes table.
Old locus tagC1S61_00475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_POUF01000072.1Sequence record reported by the local genomic context database.
Genomic interval172-1 174 nt1 003 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span172-1 174 ntGCF_022342335::NZ_POUF01000072.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022342335::NZ_POUF01000072.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_POUF01000072.1All displayed genes belong to this local TCS context.
Neighborhood span172-1 174 nt1 003 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
172 nt1 174 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C1S61_RS00440GCF_022342335#C1S61_RS00440
HKClassicCurrent focus
172-1 174 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0207350Use this link to inspect the representative gene detail.
PFAM architecturePAS_8 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0387802
Simplified PFAM architecture for HKOC_0387802
PFAM domain coverage: 221 / 912 aa (24.2%)
1 aa912 aa
PAS_8HisKAHATPase_c
- Simplified architecture: PAS_8 + HisKA + HATPase_c
- Raw architecture: PAS_8[532-572] | HisKA[656-724] | HATPase_c[774-884]
- Domain count: 3
- Matched identifier: HKOC_0387802
- Positioned domains: PAS_8 532-572 ; HisKA 656-724 ; HATPase_c 774-884
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0207350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_022342335
AssemblyASM2234233v1 · Contighaploid
Genome composition4 108 338 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key