1 Response_reg#1
4-116 aa · 113 aa · 22.2% of protein
Raw token
Response_reg:4:6.32e-31:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0P42_RS00535
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_022136235
ClassRRTypeunclassifiedLength508 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136235#L0P42_RS00535Stable P2CS identifier used across views.
GenomeGCF_022136235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length508 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 508 aa (36.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa508 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
412-453 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:412:0.000000000907:453:42:423 HTH_AraC#3
474-502 aa · 29 aa · 5.7% of protein
Raw token
HTH_AraC:474:0.0000141:502:29:42- Raw architecture: Response_reg:4:6.32e-31:116:116:111#HTH_AraC:412:0.000000000907:453:42:42#HTH_AraC:474:0.0000141:502:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136235::NZ_JAKNFY010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104973-108301Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0P42_00540RefSeq proteinWP_118601208.1
Context group ID
GCF_022136235::NZ_JAKNFY010000001.1::G00002Context members
L0P42_RS00535L0P42_RS00540
Partner locus tags
L0P42_RS00535L0P42_RS00540
Partner old locus tags
L0P42_00540L0P42_00545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118601208.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0P42_RS00535Primary locus identifier stored in the genes table.
Old locus tagL0P42_00540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNFY010000001.1Sequence record reported by the local genomic context database.
Genomic interval104 973-106 499 nt1 527 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span104 973-108 301 ntGCF_022136235::NZ_JAKNFY010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136235::NZ_JAKNFY010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNFY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span104 973-108 301 nt3 329 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 973 nt108 301 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0P42_RS00535GCF_022136235#L0P42_RS00535
RRunclassifiedCurrent focus
104 973-106 499 nt · Forward (+)
L0P42_RS00540GCF_022136235#L0P42_RS00540
HKClassic
106 499-108 301 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479155#DWX26_RS08070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0148941
Simplified PFAM architecture for RROC_0148941
PFAM domain coverage: 191 / 508 aa (37.6%)
1 aa508 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[426-504]
- Domain count: 2
- Matched identifier: RROC_0148941
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 426-504 ; HTH_18 426-504
Cluster members and taxonomy
Representative gene: GCF_003479155#DWX26_RS08070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_022136235
AssemblyContighaploid
Genome composition3 512 227 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key