1 HAMP#1
315-381 aa · 67 aa · 10.6% of protein
Raw token
HAMP:315:0.000000000031:381:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0N02_RS13960
Histidine kinase, Classic
Blautia faecis · GCF_022136135
ClassHKTypeClassicLength633 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136135#L0N02_RS13960Stable P2CS identifier used across views.
GenomeGCF_022136135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length633 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 633 aa (39.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa633 aa
Domain-by-domain annotation3 items
2 His_kinase#2
397-475 aa · 79 aa · 12.5% of protein
Raw token
His_kinase:397:1.47e-27:475:79:803 HATPase_c#3
493-594 aa · 102 aa · 16.1% of protein
Raw token
HATPase_c:493:0.000000000000704:594:111:109- Raw architecture: HAMP:315:0.000000000031:381:67:69#His_kinase:397:1.47e-27:475:79:80#HATPase_c:493:0.000000000000704:594:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136135::NZ_JAKNGB010000042.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25477-28870Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0N02_13955RefSeq proteinWP_226837566.1
Context group ID
GCF_022136135::NZ_JAKNGB010000042.1::G00056Context members
L0N02_RS13955L0N02_RS13960
Partner locus tags
L0N02_RS13955L0N02_RS13960
Partner old locus tags
L0N02_13950L0N02_13955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226837566.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0N02_RS13960Primary locus identifier stored in the genes table.
Old locus tagL0N02_13955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNGB010000042.1Sequence record reported by the local genomic context database.
Genomic interval26 969-28 870 nt1 902 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 477-28 870 ntGCF_022136135::NZ_JAKNGB010000042.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136135::NZ_JAKNGB010000042.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNGB010000042.1All displayed genes belong to this local TCS context.
Neighborhood span25 477-28 870 nt3 394 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 477 nt28 870 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0N02_RS13955GCF_022136135#L0N02_RS13955
RRunclassified
25 477-27 078 nt · Forward (+)
L0N02_RS13960GCF_022136135#L0N02_RS13960
HKClassicCurrent focus
26 969-28 870 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS13905Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0939569
Simplified PFAM architecture for HKOC_0939569
PFAM domain coverage: 226 / 633 aa (35.7%)
1 aa633 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[330-380] | His_kinase[397-472] | HATPase_c[495-593]
- Domain count: 3
- Matched identifier: HKOC_0939569
- Positioned domains: HAMP 330-380 ; His_kinase 397-472 ; HATPase_c 495-593
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS13905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136135
AssemblyContighaploid
Genome composition4 573 545 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 135 · HK 67 · RR 67CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key