1 HAMP#1
1-68 aa · 68 aa · 23.0% of protein
Raw token
HAMP:1:0.000000000022:68:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0N02_RS12410
Histidine kinase, Classic
Blautia faecis · GCF_022136135
ClassHKTypeClassicLength296 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022136135#L0N02_RS12410Stable P2CS identifier used across views.
GenomeGCF_022136135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length296 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 296 aa (78.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa296 aa
Domain-by-domain annotation3 items
2 HisKA#2
80-140 aa · 61 aa · 20.6% of protein
Raw token
HisKA:80:0.0000000000499:140:61:643 HATPase_c#3
193-295 aa · 103 aa · 34.8% of protein
Raw token
HATPase_c:193:1.16e-22:295:106:109- Raw architecture: HAMP:1:0.000000000022:68:68:69#HisKA:80:0.0000000000499:140:61:64#HATPase_c:193:1.16e-22:295:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022136135::NZ_JAKNGB010000034.1::G00051
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span47864-48754Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0N02_12410RefSeq proteinWP_237925898.1
Context group ID
GCF_022136135::NZ_JAKNGB010000034.1::G00051Context members
L0N02_RS12410
Partner locus tags
L0N02_RS12410
Partner old locus tags
L0N02_12410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_237925898.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0N02_RS12410Primary locus identifier stored in the genes table.
Old locus tagL0N02_12410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNGB010000034.1Sequence record reported by the local genomic context database.
Genomic interval47 864-48 754 nt891 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span47 864-48 754 ntGCF_022136135::NZ_JAKNGB010000034.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136135::NZ_JAKNGB010000034.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNGB010000034.1All displayed genes belong to this local TCS context.
Neighborhood span47 864-48 754 nt891 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 864 nt48 754 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
L0N02_RS12410GCF_022136135#L0N02_RS12410
HKClassicCurrent focus
47 864-48 754 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS20275Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2891594
Simplified PFAM architecture for HKOC_2891594
PFAM domain coverage: 208 / 296 aa (70.3%)
1 aa296 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[21-66] | HisKA[80-139] | HATPase_c[193-294]
- Domain count: 3
- Matched identifier: HKOC_2891594
- Positioned domains: HAMP 21-66 ; HisKA 80-139 ; HATPase_c 193-294
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS20275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136135
AssemblyContighaploid
Genome composition4 573 545 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 135 · HK 67 · RR 67CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key