1 dCache_1#1
46-291 aa · 246 aa · 40.7% of protein
Raw token
dCache_1:46:5.09e-18:291:250:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0N02_RS12125
Histidine kinase, Classic
Blautia faecis · GCF_022136135
ClassHKTypeClassicLength604 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022136135#L0N02_RS12125Stable P2CS identifier used across views.
GenomeGCF_022136135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length604 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage505 / 604 aa (83.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa604 aa
Domain-by-domain annotation4 items
2 HAMP#2
310-380 aa · 71 aa · 11.8% of protein
Raw token
HAMP:310:0.00000000000000112:380:71:693 His_kinase#3
395-474 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:395:4.22e-35:474:80:804 HATPase_c#4
490-597 aa · 108 aa · 17.9% of protein
Raw token
HATPase_c:490:4.13e-17:597:112:109- Raw architecture: dCache_1:46:5.09e-18:291:250:195#HAMP:310:0.00000000000000112:380:71:69#His_kinase:395:4.22e-35:474:80:80#HATPase_c:490:4.13e-17:597:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022136135::NZ_JAKNGB010000033.1::G00048
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span47279-49093Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0N02_12125RefSeq proteinWP_173717496.1
Context group ID
GCF_022136135::NZ_JAKNGB010000033.1::G00048Context members
L0N02_RS12125
Partner locus tags
L0N02_RS12125
Partner old locus tags
L0N02_12125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173717496.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0N02_RS12125Primary locus identifier stored in the genes table.
Old locus tagL0N02_12125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNGB010000033.1Sequence record reported by the local genomic context database.
Genomic interval47 279-49 093 nt1 815 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 279-49 093 ntGCF_022136135::NZ_JAKNGB010000033.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136135::NZ_JAKNGB010000033.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNGB010000033.1All displayed genes belong to this local TCS context.
Neighborhood span47 279-49 093 nt1 815 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 279 nt49 093 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
L0N02_RS12125GCF_022136135#L0N02_RS12125
HKClassicCurrent focus
47 279-49 093 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300155#G4470_RS17535Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1034344
Simplified PFAM architecture for HKOC_1034344
PFAM domain coverage: 478 / 604 aa (79.1%)
1 aa604 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[54-291] | HAMP[326-380] | His_kinase[395-474] | HATPase_c[492-596]
- Domain count: 4
- Matched identifier: HKOC_1034344
- Positioned domains: dCache_1 54-291 ; HAMP 326-380 ; His_kinase 395-474 ; HATPase_c 492-596
Cluster members and taxonomy
Representative gene: GCF_013300155#G4470_RS17535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136135
AssemblyContighaploid
Genome composition4 573 545 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 135 · HK 67 · RR 67CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key