1 HAMP#1
304-372 aa · 69 aa · 12.0% of protein
Raw token
HAMP:304:0.000000000396:372:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0N02_RS09035
Histidine kinase, Classic
Blautia faecis · GCF_022136135
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136135#L0N02_RS09035Stable P2CS identifier used across views.
GenomeGCF_022136135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 577 aa (41.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 His_kinase#2
387-466 aa · 80 aa · 13.9% of protein
Raw token
His_kinase:387:7.71e-27:466:80:803 HATPase_c#3
485-577 aa · 93 aa · 16.1% of protein
Raw token
HATPase_c:485:0.0000000119:577:108:109- Raw architecture: HAMP:304:0.000000000396:372:69:69#His_kinase:387:7.71e-27:466:80:80#HATPase_c:485:0.0000000119:577:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136135::NZ_JAKNGB010000021.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52263-55101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0N02_09035RefSeq proteinWP_195392109.1
Context group ID
GCF_022136135::NZ_JAKNGB010000021.1::G00027Context members
L0N02_RS09035L0N02_RS09040
Partner locus tags
L0N02_RS09035L0N02_RS09040
Partner old locus tags
L0N02_09035L0N02_09040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195392109.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0N02_RS09035Primary locus identifier stored in the genes table.
Old locus tagL0N02_09035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNGB010000021.1Sequence record reported by the local genomic context database.
Genomic interval52 263-53 996 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 263-55 101 ntGCF_022136135::NZ_JAKNGB010000021.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136135::NZ_JAKNGB010000021.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNGB010000021.1All displayed genes belong to this local TCS context.
Neighborhood span52 263-55 101 nt2 839 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 263 nt55 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0N02_RS09035GCF_022136135#L0N02_RS09035
HKClassicCurrent focus
52 263-53 996 nt · Forward (+)
L0N02_RS09040GCF_022136135#L0N02_RS09040
RRunclassified
54 031-55 101 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015552475#I2D95_RS15145Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1179516
Simplified PFAM architecture for HKOC_1179516
PFAM domain coverage: 175 / 577 aa (30.3%)
1 aa577 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[387-466] | HATPase_c[482-576]
- Domain count: 2
- Matched identifier: HKOC_1179516
- Positioned domains: His_kinase 387-466 ; HATPase_c 482-576
Cluster members and taxonomy
Representative gene: GCF_015552475#I2D95_RS15145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136135
AssemblyContighaploid
Genome composition4 573 545 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 135 · HK 67 · RR 67CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key