1 HAMP#1
177-246 aa · 70 aa · 14.8% of protein
Raw token
HAMP:177:0.00000000000208:246:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0N02_RS05895
Histidine kinase, Classic
Blautia faecis · GCF_022136135
ClassHKTypeClassicLength474 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136135#L0N02_RS05895Stable P2CS identifier used across views.
GenomeGCF_022136135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length474 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage234 / 474 aa (49.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa474 aa
Domain-by-domain annotation3 items
2 HisKA#2
257-318 aa · 62 aa · 13.1% of protein
Raw token
HisKA:257:0.000000000000865:318:62:643 HATPase_c#3
371-472 aa · 102 aa · 21.5% of protein
Raw token
HATPase_c:371:1.54e-24:472:105:109- Raw architecture: HAMP:177:0.00000000000208:246:70:69#HisKA:257:0.000000000000865:318:62:64#HATPase_c:371:1.54e-24:472:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136135::NZ_JAKNGB010000011.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79554-81640Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0N02_05895RefSeq proteinWP_173717239.1
Context group ID
GCF_022136135::NZ_JAKNGB010000011.1::G00010Context members
L0N02_RS05895L0N02_RS05900
Partner locus tags
L0N02_RS05895L0N02_RS05900
Partner old locus tags
L0N02_05895L0N02_05900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173717239.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0N02_RS05895Primary locus identifier stored in the genes table.
Old locus tagL0N02_05895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNGB010000011.1Sequence record reported by the local genomic context database.
Genomic interval79 554-80 978 nt1 425 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 554-81 640 ntGCF_022136135::NZ_JAKNGB010000011.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136135::NZ_JAKNGB010000011.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNGB010000011.1All displayed genes belong to this local TCS context.
Neighborhood span79 554-81 640 nt2 087 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 554 nt81 640 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0N02_RS05895GCF_022136135#L0N02_RS05895
HKClassicCurrent focus
79 554-80 978 nt · Reverse (-)
L0N02_RS05900GCF_022136135#L0N02_RS05900
RROmpR
80 975-81 640 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS13365Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1679028
Simplified PFAM architecture for HKOC_1679028
PFAM domain coverage: 214 / 474 aa (45.1%)
1 aa474 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-245] | HisKA[257-317] | HATPase_c[371-472]
- Domain count: 3
- Matched identifier: HKOC_1679028
- Positioned domains: HAMP 195-245 ; HisKA 257-317 ; HATPase_c 371-472
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS13365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136135
AssemblyContighaploid
Genome composition4 573 545 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 135 · HK 67 · RR 67CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key