1 HAMP#1
189-258 aa · 70 aa · 14.0% of protein
Raw token
HAMP:189:0.0000000000000356:258:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0N02_RS03970
Histidine kinase, Classic
Blautia faecis · GCF_022136135
ClassHKTypeClassicLength500 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136135#L0N02_RS03970Stable P2CS identifier used across views.
GenomeGCF_022136135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length500 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 500 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa500 aa
Domain-by-domain annotation3 items
2 His_kinase#2
288-367 aa · 80 aa · 16.0% of protein
Raw token
His_kinase:288:4.4e-28:367:80:803 HATPase_c#3
386-494 aa · 109 aa · 21.8% of protein
Raw token
HATPase_c:386:0.0000000000000464:494:109:109- Raw architecture: HAMP:189:0.0000000000000356:258:70:69#His_kinase:288:4.4e-28:367:80:80#HATPase_c:386:0.0000000000000464:494:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136135::NZ_JAKNGB010000007.1::G00075
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75344-78512Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0N02_03970RefSeq proteinWP_173717153.1
Context group ID
GCF_022136135::NZ_JAKNGB010000007.1::G00075Context members
L0N02_RS03965L0N02_RS03970
Partner locus tags
L0N02_RS03965L0N02_RS03970
Partner old locus tags
L0N02_03965L0N02_03970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173717153.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2HAI4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2HAI4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0N02_RS03970Primary locus identifier stored in the genes table.
Old locus tagL0N02_03970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNGB010000007.1Sequence record reported by the local genomic context database.
Genomic interval77 010-78 512 nt1 503 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 344-78 512 ntGCF_022136135::NZ_JAKNGB010000007.1::G00075
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136135::NZ_JAKNGB010000007.1::G00075Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNGB010000007.1All displayed genes belong to this local TCS context.
Neighborhood span75 344-78 512 nt3 169 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 344 nt78 512 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0N02_RS03965GCF_022136135#L0N02_RS03965
RRunclassified
75 344-76 939 nt · Reverse (-)
L0N02_RS03970GCF_022136135#L0N02_RS03970
HKClassicCurrent focus
77 010-78 512 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300155#G4470_RS14535Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1477245
Simplified PFAM architecture for HKOC_1477245
PFAM domain coverage: 239 / 500 aa (47.8%)
1 aa500 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[207-258] | His_kinase[288-364] | HATPase_c[385-494]
- Domain count: 3
- Matched identifier: HKOC_1477245
- Positioned domains: HAMP 207-258 ; His_kinase 288-364 ; HATPase_c 385-494
Cluster members and taxonomy
Representative gene: GCF_013300155#G4470_RS14535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136135
AssemblyContighaploid
Genome composition4 573 545 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 135 · HK 67 · RR 67CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key