1 Response_reg#1
4-117 aa · 114 aa · 21.5% of protein
Raw token
Response_reg:4:2.85e-27:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0N02_RS03965
Response regulator, unclassified
Blautia faecis · GCF_022136135
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136135#L0N02_RS03965Stable P2CS identifier used across views.
GenomeGCF_022136135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 531 aa (36.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-477 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:436:0.0000000000209:477:42:423 HTH_AraC#3
490-525 aa · 36 aa · 6.8% of protein
Raw token
HTH_AraC:490:0.0000000121:525:36:42- Raw architecture: Response_reg:4:2.85e-27:117:114:111#HTH_AraC:436:0.0000000000209:477:42:42#HTH_AraC:490:0.0000000121:525:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136135::NZ_JAKNGB010000007.1::G00075
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75344-78512Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0N02_03965RefSeq proteinWP_173717154.1
Context group ID
GCF_022136135::NZ_JAKNGB010000007.1::G00075Context members
L0N02_RS03965L0N02_RS03970
Partner locus tags
L0N02_RS03965L0N02_RS03970
Partner old locus tags
L0N02_03965L0N02_03970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173717154.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2HA72Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2HA72_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0N02_RS03965Primary locus identifier stored in the genes table.
Old locus tagL0N02_03965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNGB010000007.1Sequence record reported by the local genomic context database.
Genomic interval75 344-76 939 nt1 596 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 344-78 512 ntGCF_022136135::NZ_JAKNGB010000007.1::G00075
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136135::NZ_JAKNGB010000007.1::G00075Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNGB010000007.1All displayed genes belong to this local TCS context.
Neighborhood span75 344-78 512 nt3 169 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 344 nt78 512 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0N02_RS03965GCF_022136135#L0N02_RS03965
RRunclassifiedCurrent focus
75 344-76 939 nt · Reverse (-)
L0N02_RS03970GCF_022136135#L0N02_RS03970
HKClassic
77 010-78 512 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300155#G4470_RS14540Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0110301
Simplified PFAM architecture for RROC_0110301
PFAM domain coverage: 283 / 531 aa (53.3%)
1 aa531 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[203-294] | HTH_18[451-528]
- Domain count: 3
- Matched identifier: RROC_0110301
- Positioned domains: Response_reg 4-116 ; GGDEF_2 203-294 ; HTH_18 451-528
Cluster members and taxonomy
Representative gene: GCF_013300155#G4470_RS14540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136135
AssemblyContighaploid
Genome composition4 573 545 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 135 · HK 67 · RR 67CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key