1 Response_reg#1
4-112 aa · 109 aa · 48.0% of protein
Raw token
Response_reg:4:2.46e-23:112:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0N02_RS03635
Response regulator OmpR family
Blautia faecis · GCF_022136135
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136135#L0N02_RS03635Stable P2CS identifier used across views.
GenomeGCF_022136135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 227 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:145:2.37e-26:220:77:77- Raw architecture: Response_reg:4:2.46e-23:112:113:111#Trans_reg_C:145:2.37e-26:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136135::NZ_JAKNGB010000007.1::G00069
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3487-5235Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0N02_03635RefSeq proteinWP_227080751.1
Context group ID
GCF_022136135::NZ_JAKNGB010000007.1::G00069Context members
L0N02_RS03630L0N02_RS03635
Partner locus tags
L0N02_RS03630L0N02_RS03635
Partner old locus tags
L0N02_03630L0N02_03635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_227080751.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ0C0R7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ0C0R7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0N02_RS03635Primary locus identifier stored in the genes table.
Old locus tagL0N02_03635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNGB010000007.1Sequence record reported by the local genomic context database.
Genomic interval4 552-5 235 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 487-5 235 ntGCF_022136135::NZ_JAKNGB010000007.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136135::NZ_JAKNGB010000007.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNGB010000007.1All displayed genes belong to this local TCS context.
Neighborhood span3 487-5 235 nt1 749 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 487 nt5 235 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0N02_RS03630GCF_022136135#L0N02_RS03630
HKClassic
3 487-4 500 nt · Reverse (-)
L0N02_RS03635GCF_022136135#L0N02_RS03635
RROmpRCurrent focus
4 552-5 235 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557905#LIZ97_RS03625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1380024
Simplified PFAM architecture for RROC_1380024
PFAM domain coverage: 184 / 227 aa (81.1%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1380024
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_020557905#LIZ97_RS03625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136135
AssemblyContighaploid
Genome composition4 573 545 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 135 · HK 67 · RR 67CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key