1 Response_reg#1
7-124 aa · 118 aa · 22.6% of protein
Raw token
Response_reg:7:8.68e-29:124:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0N02_RS01105
Response regulator, unclassified
Blautia faecis · GCF_022136135
ClassRRTypeunclassifiedLength522 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136135#L0N02_RS01105Stable P2CS identifier used across views.
GenomeGCF_022136135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length522 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 522 aa (36.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa522 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
430-464 aa · 35 aa · 6.7% of protein
Raw token
HTH_AraC:430:0.000000112:464:35:423 HTH_AraC#3
476-512 aa · 37 aa · 7.1% of protein
Raw token
HTH_AraC:476:0.0000257:512:37:42- Raw architecture: Response_reg:7:8.68e-29:124:118:111#HTH_AraC:430:0.000000112:464:35:42#HTH_AraC:476:0.0000257:512:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136135::NZ_JAKNGB010000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65385-68694Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0N02_01105RefSeq proteinWP_173718352.1
Context group ID
GCF_022136135::NZ_JAKNGB010000002.1::G00025Context members
L0N02_RS01100L0N02_RS01105
Partner locus tags
L0N02_RS01100L0N02_RS01105
Partner old locus tags
L0N02_01100L0N02_01105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173718352.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0N02_RS01105Primary locus identifier stored in the genes table.
Old locus tagL0N02_01105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNGB010000002.1Sequence record reported by the local genomic context database.
Genomic interval67 126-68 694 nt1 569 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span65 385-68 694 ntGCF_022136135::NZ_JAKNGB010000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136135::NZ_JAKNGB010000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNGB010000002.1All displayed genes belong to this local TCS context.
Neighborhood span65 385-68 694 nt3 310 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 385 nt68 694 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0N02_RS01100GCF_022136135#L0N02_RS01100
HKClassic
65 385-67 097 nt · Reverse (-)
L0N02_RS01105GCF_022136135#L0N02_RS01105
RRunclassifiedCurrent focus
67 126-68 694 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS06085Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0123495
Simplified PFAM architecture for RROC_0123495
PFAM domain coverage: 182 / 522 aa (34.9%)
1 aa522 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[7-110] | HTH_18[437-514]
- Domain count: 2
- Matched identifier: RROC_0123495
- Positioned domains: Response_reg 7-110 ; HTH_18 437-514
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS06085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136135
AssemblyContighaploid
Genome composition4 573 545 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 135 · HK 67 · RR 67CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key