1 HAMP#1
278-347 aa · 70 aa · 12.3% of protein
Raw token
HAMP:278:0.000000000000108:347:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0N02_RS01100
Histidine kinase, Classic
Blautia faecis · GCF_022136135
ClassHKTypeClassicLength570 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136135#L0N02_RS01100Stable P2CS identifier used across views.
GenomeGCF_022136135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length570 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 570 aa (45.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa570 aa
Domain-by-domain annotation3 items
2 His_kinase#2
363-443 aa · 81 aa · 14.2% of protein
Raw token
His_kinase:363:1.61e-16:443:81:803 HATPase_c#3
462-567 aa · 106 aa · 18.6% of protein
Raw token
HATPase_c:462:0.0000000114:567:109:109- Raw architecture: HAMP:278:0.000000000000108:347:70:69#His_kinase:363:1.61e-16:443:81:80#HATPase_c:462:0.0000000114:567:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136135::NZ_JAKNGB010000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65385-68694Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0N02_01100RefSeq proteinWP_173718353.1
Context group ID
GCF_022136135::NZ_JAKNGB010000002.1::G00025Context members
L0N02_RS01100L0N02_RS01105
Partner locus tags
L0N02_RS01100L0N02_RS01105
Partner old locus tags
L0N02_01100L0N02_01105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173718353.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0N02_RS01100Primary locus identifier stored in the genes table.
Old locus tagL0N02_01100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNGB010000002.1Sequence record reported by the local genomic context database.
Genomic interval65 385-67 097 nt1 713 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span65 385-68 694 ntGCF_022136135::NZ_JAKNGB010000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136135::NZ_JAKNGB010000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNGB010000002.1All displayed genes belong to this local TCS context.
Neighborhood span65 385-68 694 nt3 310 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 385 nt68 694 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0N02_RS01100GCF_022136135#L0N02_RS01100
HKClassicCurrent focus
65 385-67 097 nt · Reverse (-)
L0N02_RS01105GCF_022136135#L0N02_RS01105
RRunclassified
67 126-68 694 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS06090Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1213551
Simplified PFAM architecture for HKOC_1213551
PFAM domain coverage: 235 / 570 aa (41.2%)
1 aa570 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[298-346] | His_kinase[364-441] | HATPase_c[460-567]
- Domain count: 3
- Matched identifier: HKOC_1213551
- Positioned domains: HAMP 298-346 ; His_kinase 364-441 ; HATPase_c 460-567
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS06090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136135
AssemblyContighaploid
Genome composition4 573 545 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 135 · HK 67 · RR 67CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key