1 Response_reg#1
30-143 aa · 114 aa · 48.1% of protein
Raw token
Response_reg:30:1.68e-19:143:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0P18_RS04910
Response regulator NarL family
Bifidobacterium adolescentis · GCF_022135325
ClassRRTypeNarLLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022135325#L0P18_RS04910Stable P2CS identifier used across views.
GenomeGCF_022135325Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 237 aa (71.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
174-228 aa · 55 aa · 23.2% of protein
Raw token
HTH_LUXR:174:0.000000000000672:228:55:58- Raw architecture: Response_reg:30:1.68e-19:143:115:111#HTH_LUXR:174:0.000000000000672:228:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022135325::NZ_JAKNGZ010000003.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span163752-164465Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0P18_04910RefSeq proteinWP_237936358.1
Context group ID
GCF_022135325::NZ_JAKNGZ010000003.1::G00011Context members
L0P18_RS04910
Partner locus tags
L0P18_RS04910
Partner old locus tags
L0P18_04910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_237936358.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0P18_RS04910Primary locus identifier stored in the genes table.
Old locus tagL0P18_04910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNGZ010000003.1Sequence record reported by the local genomic context database.
Genomic interval163 752-164 465 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span163 752-164 465 ntGCF_022135325::NZ_JAKNGZ010000003.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022135325::NZ_JAKNGZ010000003.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNGZ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span163 752-164 465 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 752 nt164 465 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
L0P18_RS04910GCF_022135325#L0P18_RS04910
RRNarLCurrent focus
163 752-164 465 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022135325#L0P18_RS04910The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0975819
Simplified PFAM architecture for RROC_0975819
PFAM domain coverage: 169 / 237 aa (71.3%)
1 aa237 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[30-143] | GerE[174-228]
- Domain count: 2
- Matched identifier: RROC_0975819
- Positioned domains: Response_reg 30-143 ; GerE 174-228
Cluster members and taxonomy
Representative gene: GCF_022135325#L0P18_RS04910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_022135325
AssemblyContighaploid
Genome composition2 308 340 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key