1 HisKA#1
180-245 aa · 66 aa · 14.9% of protein
Raw token
HisKA:180:0.000000000236:245:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0M87_RS00325
Histidine kinase, Classic
Bifidobacterium longum · GCF_022132485
ClassHKTypeClassicLength443 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022132485#L0M87_RS00325Stable P2CS identifier used across views.
GenomeGCF_022132485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length443 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 443 aa (40.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
316-428 aa · 113 aa · 25.5% of protein
Raw token
HATPase_c:316:7.99e-29:428:113:109- Raw architecture: HisKA:180:0.000000000236:245:66:64#HATPase_c:316:7.99e-29:428:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022132485::NZ_JAKNIY010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74030-76264Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0M87_00325RefSeq proteinWP_217052749.1
Context group ID
GCF_022132485::NZ_JAKNIY010000001.1::G00001Context members
L0M87_RS00320L0M87_RS00325
Partner locus tags
L0M87_RS00320L0M87_RS00325
Partner old locus tags
L0M87_00320L0M87_00325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217052749.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0M87_RS00325Primary locus identifier stored in the genes table.
Old locus tagL0M87_00325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNIY010000001.1Sequence record reported by the local genomic context database.
Genomic interval74 933-76 264 nt1 332 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span74 030-76 264 ntGCF_022132485::NZ_JAKNIY010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022132485::NZ_JAKNIY010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNIY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span74 030-76 264 nt2 235 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 030 nt76 264 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0M87_RS00320GCF_022132485#L0M87_RS00320
RROmpR
74 030-74 734 nt · Reverse (-)
L0M87_RS00325GCF_022132485#L0M87_RS00325
HKClassicCurrent focus
74 933-76 264 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019041555#KTF51_RS06255Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2046334
Simplified PFAM architecture for HKOC_2046334
PFAM domain coverage: 176 / 443 aa (39.7%)
1 aa443 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[317-427]
- Domain count: 2
- Matched identifier: HKOC_2046334
- Positioned domains: HisKA 180-244 ; HATPase_c 317-427
Cluster members and taxonomy
Representative gene: GCF_019041555#KTF51_RS06255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_022132485
AssemblyContighaploid
Genome composition2 490 242 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key