1 Response_reg#1
7-117 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:7:1.22e-33:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFR88_RS01015
Response regulator OmpR family
Francisella tularensis · GCF_021608725
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021608725#LFR88_RS01015Stable P2CS identifier used across views.
GenomeGCF_021608725Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 229 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-227 aa · 75 aa · 32.8% of protein
Raw token
Trans_reg_C:153:3.06e-28:227:76:77- Raw architecture: Response_reg:7:1.22e-33:117:111:111#Trans_reg_C:153:3.06e-28:227:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021608725::NZ_JAIXOD010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span197045-197734Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLFR88_01005RefSeq proteinWP_003022431.1
Context group ID
GCF_021608725::NZ_JAIXOD010000001.1::G00001Context members
LFR88_RS01015
Partner locus tags
LFR88_RS01015
Partner old locus tags
LFR88_01005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003022431.1Primary protein accession used for annex mappings.
UniProt accessionA0AAD3AV56Primary UniProt accession resolved in the annex database.
UniProt IDA0AAD3AV56_FRATTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFR88_RS01015Primary locus identifier stored in the genes table.
Old locus tagLFR88_01005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOD010000001.1Sequence record reported by the local genomic context database.
Genomic interval197 045-197 734 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span197 045-197 734 ntGCF_021608725::NZ_JAIXOD010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021608725::NZ_JAIXOD010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span197 045-197 734 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
197 045 nt197 734 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LFR88_RS01015GCF_021608725#LFR88_RS01015
RROmpRCurrent focus
197 045-197 734 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008985#FTT_RS08120Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246153
Simplified PFAM architecture for RROC_1246153
PFAM domain coverage: 182 / 229 aa (79.5%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[155-226]
- Domain count: 2
- Matched identifier: RROC_1246153
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 155-226 ; Trans_reg_C 155-226
Cluster members and taxonomy
Representative gene: GCF_000008985#FTT_RS08120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 263 · GCF_021608725
AssemblyASM2160872v1 · Contighaploid
Genome composition1 859 080 bp · 32,5% GCFrancisella tularensis
Signal transduction countsGenes 5 · HK 2 · RR 3CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key