1 KdpD#1
22-230 aa · 209 aa · 23.1% of protein
Raw token
KdpD:22:8.17e-134:230:209:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I6E59_RS11025
Histidine kinase, Classic
Clostridioides difficile · GCF_021532205
ClassHKTypeClassicLength904 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021532205#I6E59_RS11025Stable P2CS identifier used across views.
GenomeGCF_021532205Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
KdpDGAF_3HisKAHATPase_c
Protein length904 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage514 / 904 aa (56.9%)Merged over positioned domains only.
Domain description1 KdpD,1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa904 aa
Domain-by-domain annotation4 items
2 GAF_3#2
537-660 aa · 124 aa · 13.7% of protein
Raw token
GAF_3:537:0.00000575:660:129:1293 HisKA#3
680-747 aa · 68 aa · 7.5% of protein
Raw token
HisKA:680:0.00000000000615:747:68:644 HATPase_c#4
791-903 aa · 113 aa · 12.5% of protein
Raw token
HATPase_c:791:9.97e-30:903:113:109- Raw architecture: KdpD:22:8.17e-134:230:209:210#GAF_3:537:0.00000575:660:129:129#HisKA:680:0.00000000000615:747:68:64#HATPase_c:791:9.97e-30:903:113:109
- Domain description: 1 KdpD,1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021532205::NZ_JADYVA010000012.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11479-14925Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI6E59_10970RefSeq proteinWP_235423812.1
Context group ID
GCF_021532205::NZ_JADYVA010000012.1::G00002Context members
I6E59_RS11025I6E59_RS11030
Partner locus tags
I6E59_RS11025I6E59_RS11030
Partner old locus tags
I6E59_10970I6E59_10975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235423812.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI6E59_RS11025Primary locus identifier stored in the genes table.
Old locus tagI6E59_10970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADYVA010000012.1Sequence record reported by the local genomic context database.
Genomic interval11 479-14 193 nt2 715 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 479-14 925 ntGCF_021532205::NZ_JADYVA010000012.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021532205::NZ_JADYVA010000012.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADYVA010000012.1All displayed genes belong to this local TCS context.
Neighborhood span11 479-14 925 nt3 447 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 479 nt14 925 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I6E59_RS11025GCF_021532205#I6E59_RS11025
HKClassicCurrent focus
11 479-14 193 nt · Forward (+)
I6E59_RS11030GCF_021532205#I6E59_RS11030
RROmpR
14 227-14 925 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021532205#I6E59_RS11025The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0400722
Simplified PFAM architecture for HKOC_0400722
PFAM domain coverage: 494 / 904 aa (54.6%)
1 aa904 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[22-230] | DUF4118[413-518] | HisKA[680-747] | HATPase_c[792-902]
- Domain count: 4
- Matched identifier: HKOC_0400722
- Positioned domains: KdpD 22-230 ; DUF4118 413-518 ; HisKA 680-747 ; HATPase_c 792-902
Cluster members and taxonomy
Representative gene: GCF_021532205#I6E59_RS11025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021532205
AssemblyASM2153220v1 · Contighaploid
Genome composition4 148 448 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key