1 HisKA#1
199-263 aa · 65 aa · 15.3% of protein
Raw token
HisKA:199:0.0000000000000145:263:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I6E79_RS05960
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_021532045
ClassHKTypeClassicLength426 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021532045#I6E79_RS05960Stable P2CS identifier used across views.
GenomeGCF_021532045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length426 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 426 aa (37.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa426 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
310-403 aa · 94 aa · 22.1% of protein
Raw token
HATPase_c:310:0.000000000000773:403:95:109- Raw architecture: HisKA:199:0.0000000000000145:263:65:64#HATPase_c:310:0.000000000000773:403:95:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021532045::NZ_JADYUQ010000009.1::G00047
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span51233-52513Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI6E79_05945RefSeq proteinWP_235427659.1
Context group ID
GCF_021532045::NZ_JADYUQ010000009.1::G00047Context members
I6E79_RS05960
Partner locus tags
I6E79_RS05960
Partner old locus tags
I6E79_05945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235427659.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI6E79_RS05960Primary locus identifier stored in the genes table.
Old locus tagI6E79_05945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADYUQ010000009.1Sequence record reported by the local genomic context database.
Genomic interval51 233-52 513 nt1 281 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 233-52 513 ntGCF_021532045::NZ_JADYUQ010000009.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021532045::NZ_JADYUQ010000009.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADYUQ010000009.1All displayed genes belong to this local TCS context.
Neighborhood span51 233-52 513 nt1 281 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 233 nt52 513 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I6E79_RS05960GCF_021532045#I6E79_RS05960
HKClassicCurrent focus
51 233-52 513 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021532045#I6E79_RS05960The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2211359
Simplified PFAM architecture for HKOC_2211359
PFAM domain coverage: 156 / 426 aa (36.6%)
1 aa426 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[200-263] | HATPase_c[312-403]
- Domain count: 2
- Matched identifier: HKOC_2211359
- Positioned domains: HisKA 200-263 ; HATPase_c 312-403
Cluster members and taxonomy
Representative gene: GCF_021532045#I6E79_RS05960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_021532045
AssemblyASM2153204v1 · Contighaploid
Genome composition3 155 945 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 85 · HK 42 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key