1 HisKA#1
133-197 aa · 65 aa · 18.3% of protein
Raw token
HisKA:133:0.00000000000871:197:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I6E79_RS03920
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_021532045
ClassHKTypeClassicLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021532045#I6E79_RS03920Stable P2CS identifier used across views.
GenomeGCF_021532045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 356 aa (49.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-350 aa · 110 aa · 30.9% of protein
Raw token
HATPase_c:241:1.73e-25:350:111:109- Raw architecture: HisKA:133:0.00000000000871:197:65:64#HATPase_c:241:1.73e-25:350:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021532045::NZ_JADYUQ010000005.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span94881-96657Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI6E79_03905RefSeq proteinWP_173882305.1
Context group ID
GCF_021532045::NZ_JADYUQ010000005.1::G00037Context members
I6E79_RS03920I6E79_RS03925
Partner locus tags
I6E79_RS03920I6E79_RS03925
Partner old locus tags
I6E79_03905I6E79_03910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173882305.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI6E79_RS03920Primary locus identifier stored in the genes table.
Old locus tagI6E79_03905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADYUQ010000005.1Sequence record reported by the local genomic context database.
Genomic interval94 881-95 951 nt1 071 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span94 881-96 657 ntGCF_021532045::NZ_JADYUQ010000005.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021532045::NZ_JADYUQ010000005.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADYUQ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span94 881-96 657 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 881 nt96 657 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I6E79_RS03920GCF_021532045#I6E79_RS03920
HKClassicCurrent focus
94 881-95 951 nt · Forward (+)
I6E79_RS03925GCF_021532045#I6E79_RS03925
RROmpR
95 944-96 657 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302885#G4951_RS04810Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2772080
Simplified PFAM architecture for HKOC_2772080
PFAM domain coverage: 281 / 356 aa (78.9%)
1 aa356 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[10-117] | HisKA[132-196] | HATPase_c[242-349]
- Domain count: 3
- Matched identifier: HKOC_2772080
- Positioned domains: DUF4118 10-117 ; HisKA 132-196 ; HATPase_c 242-349
Cluster members and taxonomy
Representative gene: GCF_013302885#G4951_RS04810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_021532045
AssemblyASM2153204v1 · Contighaploid
Genome composition3 155 945 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 85 · HK 42 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key