1 HAMP#1
144-211 aa · 68 aa · 15.5% of protein
Raw token
HAMP:144:0.00000039:211:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I6E79_RS00890
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_021532045
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021532045#I6E79_RS00890Stable P2CS identifier used across views.
GenomeGCF_021532045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage211 / 439 aa (48.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-296 aa · 65 aa · 14.8% of protein
Raw token
HisKA:232:0.00000508:296:65:643 HATPase_c#3
342-419 aa · 78 aa · 17.8% of protein
Raw token
HATPase_c:342:0.00000519:419:90:109- Raw architecture: HAMP:144:0.00000039:211:68:69#HisKA:232:0.00000508:296:65:64#HATPase_c:342:0.00000519:419:90:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021532045::NZ_JADYUQ010000001.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span193676-195645Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI6E79_00885RefSeq proteinWP_173882809.1
Context group ID
GCF_021532045::NZ_JADYUQ010000001.1::G00020Context members
I6E79_RS00890I6E79_RS00895
Partner locus tags
I6E79_RS00890I6E79_RS00895
Partner old locus tags
I6E79_00885I6E79_00890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173882809.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI6E79_RS00890Primary locus identifier stored in the genes table.
Old locus tagI6E79_00885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADYUQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval193 676-194 995 nt1 320 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span193 676-195 645 ntGCF_021532045::NZ_JADYUQ010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021532045::NZ_JADYUQ010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADYUQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span193 676-195 645 nt1 970 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
193 676 nt195 645 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I6E79_RS00890GCF_021532045#I6E79_RS00890
HKClassicCurrent focus
193 676-194 995 nt · Reverse (-)
I6E79_RS00895GCF_021532045#I6E79_RS00895
RROmpR
194 992-195 645 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302885#G4951_RS13120Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2086056
Simplified PFAM architecture for HKOC_2086056
PFAM domain coverage: 144 / 439 aa (32.8%)
1 aa439 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-296] | HATPase_c[342-421]
- Domain count: 2
- Matched identifier: HKOC_2086056
- Positioned domains: HisKA 233-296 ; HATPase_c 342-421
Cluster members and taxonomy
Representative gene: GCF_013302885#G4951_RS13120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_021532045
AssemblyASM2153204v1 · Contighaploid
Genome composition3 155 945 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 85 · HK 42 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key