1 Response_reg#1
5-111 aa · 107 aa · 48.2% of protein
Raw token
Response_reg:5:2.59e-23:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I6E79_RS00645
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_021532045
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021532045#I6E79_RS00645Stable P2CS identifier used across views.
GenomeGCF_021532045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 222 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
141-217 aa · 77 aa · 34.7% of protein
Raw token
Trans_reg_C:141:8.32e-29:217:77:77- Raw architecture: Response_reg:5:2.59e-23:111:109:111#Trans_reg_C:141:8.32e-29:217:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021532045::NZ_JADYUQ010000001.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span145255-146858Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI6E79_00645RefSeq proteinWP_173882819.1
Context group ID
GCF_021532045::NZ_JADYUQ010000001.1::G00017Context members
I6E79_RS00640I6E79_RS00645
Partner locus tags
I6E79_RS00640I6E79_RS00645
Partner old locus tags
I6E79_00640I6E79_00645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173882819.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI6E79_RS00645Primary locus identifier stored in the genes table.
Old locus tagI6E79_00645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADYUQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval146 190-146 858 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span145 255-146 858 ntGCF_021532045::NZ_JADYUQ010000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021532045::NZ_JADYUQ010000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADYUQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span145 255-146 858 nt1 604 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
145 255 nt146 858 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I6E79_RS00640GCF_021532045#I6E79_RS00640
HKClassic
145 255-146 193 nt · Reverse (-)
I6E79_RS00645GCF_021532045#I6E79_RS00645
RROmpRCurrent focus
146 190-146 858 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302885#G4951_RS12805Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1651742
Simplified PFAM architecture for RROC_1651742
PFAM domain coverage: 183 / 222 aa (82.4%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[141-216]
- Domain count: 2
- Matched identifier: RROC_1651742
- Positioned domains: Response_reg 4-110 ; Trans_reg_C 141-216
Cluster members and taxonomy
Representative gene: GCF_013302885#G4951_RS12805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_021532045
AssemblyASM2153204v1 · Contighaploid
Genome composition3 155 945 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 85 · HK 42 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key