1 Response_reg#1
13-86 aa · 74 aa · 36.6% of protein
Raw token
Response_reg:13:0.00000000286:86:74:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0J99_RS05915
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_021484885
ClassRRTypeNarLLength202 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021484885#L0J99_RS05915Stable P2CS identifier used across views.
GenomeGCF_021484885Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length202 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage129 / 202 aa (63.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa202 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
138-192 aa · 55 aa · 27.2% of protein
Raw token
HTH_LUXR:138:2.62e-19:192:55:58- Raw architecture: Response_reg:13:0.00000000286:86:74:111#HTH_LUXR:138:2.62e-19:192:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021484885::NZ_CP090598.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1376709-1377317Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0J99_05915RefSeq proteinWP_234737314.1
Context group ID
GCF_021484885::NZ_CP090598.1::G00011Context members
L0J99_RS05915
Partner locus tags
L0J99_RS05915
Partner old locus tags
L0J99_05915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234737314.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0J99_RS05915Primary locus identifier stored in the genes table.
Old locus tagL0J99_05915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP090598.1Sequence record reported by the local genomic context database.
Genomic interval1 376 709-1 377 317 nt609 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 376 709-1 377 317 ntGCF_021484885::NZ_CP090598.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021484885::NZ_CP090598.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP090598.1All displayed genes belong to this local TCS context.
Neighborhood span1 376 709-1 377 317 nt609 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 376 709 nt1 377 317 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
L0J99_RS05915GCF_021484885#L0J99_RS05915
RRNarLCurrent focus
1 376 709-1 377 317 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173435#BIFPSEUDO_RS06860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587653
Simplified PFAM architecture for RROC_1587653
PFAM domain coverage: 159 / 223 aa (71.3%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-113] | GerE[160-213]
- Domain count: 2
- Matched identifier: RROC_1587653
- Positioned domains: Response_reg 9-113 ; Response_reg 9-113 ; GerE 160-213 ; GerE 160-213
Cluster members and taxonomy
Representative gene: GCF_000173435#BIFPSEUDO_RS06860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_021484885
AssemblyASM2148488v1 · Complete Genomehaploid
Genome composition2 369 863 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 11 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key