1 Response_reg#1
10-119 aa · 110 aa · 45.6% of protein
Raw token
Response_reg:10:2.29e-37:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0J99_RS03360
Response regulator OmpR family
Bifidobacterium pseudocatenulatum · GCF_021484885
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021484885#L0J99_RS03360Stable P2CS identifier used across views.
GenomeGCF_021484885Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-236 aa · 77 aa · 32.0% of protein
Raw token
Trans_reg_C:160:2.39e-33:236:77:77- Raw architecture: Response_reg:10:2.29e-37:119:111:111#Trans_reg_C:160:2.39e-33:236:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021484885::NZ_CP090598.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span807524-809942Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0J99_03360RefSeq proteinWP_004223699.1
Context group ID
GCF_021484885::NZ_CP090598.1::G00006Context members
L0J99_RS03360L0J99_RS03365
Partner locus tags
L0J99_RS03360L0J99_RS03365
Partner old locus tags
L0J99_03360L0J99_03365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004223699.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3IXF0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3IXF0_BIFPSDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0J99_RS03360Primary locus identifier stored in the genes table.
Old locus tagL0J99_03360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP090598.1Sequence record reported by the local genomic context database.
Genomic interval807 524-808 258 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span807 524-809 942 ntGCF_021484885::NZ_CP090598.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021484885::NZ_CP090598.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP090598.1All displayed genes belong to this local TCS context.
Neighborhood span807 524-809 942 nt2 419 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
807 524 nt809 942 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0J99_RS03360GCF_021484885#L0J99_RS03360
RROmpRCurrent focus
807 524-808 258 nt · Forward (+)
L0J99_RS03365GCF_021484885#L0J99_RS03365
HKClassic
808 272-809 942 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001025215#BBPC_RS03280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0807796
Simplified PFAM architecture for RROC_0807796
PFAM domain coverage: 185 / 244 aa (75.8%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[165-239]
- Domain count: 2
- Matched identifier: RROC_0807796
- Positioned domains: Response_reg 13-122 ; Response_reg 13-122 ; Trans_reg_C 165-239 ; Trans_reg_C 165-239
Cluster members and taxonomy
Representative gene: GCF_001025215#BBPC_RS03280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_021484885
AssemblyASM2148488v1 · Complete Genomehaploid
Genome composition2 369 863 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 11 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key