1 Response_reg#1
13-95 aa · 83 aa · 36.1% of protein
Raw token
Response_reg:13:0.0000000000384:95:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LZF93_RS07145
Response regulator NarL family
Bifidobacterium longum · GCF_021432165
ClassRRTypeNarLLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021432165#LZF93_RS07145Stable P2CS identifier used across views.
GenomeGCF_021432165Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage138 / 230 aa (60.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
169-223 aa · 55 aa · 23.9% of protein
Raw token
HTH_LUXR:169:1.33e-16:223:55:58- Raw architecture: Response_reg:13:0.0000000000384:95:83:111#HTH_LUXR:169:1.33e-16:223:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021432165::NZ_CP090414.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1647111-1647803Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLZF93_07145RefSeq proteinWP_234146732.1
Context group ID
GCF_021432165::NZ_CP090414.1::G00009Context members
LZF93_RS07145
Partner locus tags
LZF93_RS07145
Partner old locus tags
LZF93_07145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234146732.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLZF93_RS07145Primary locus identifier stored in the genes table.
Old locus tagLZF93_07145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP090414.1Sequence record reported by the local genomic context database.
Genomic interval1 647 111-1 647 803 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 647 111-1 647 803 ntGCF_021432165::NZ_CP090414.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021432165::NZ_CP090414.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP090414.1All displayed genes belong to this local TCS context.
Neighborhood span1 647 111-1 647 803 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 647 111 nt1 647 803 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LZF93_RS07145GCF_021432165#LZF93_RS07145
RRNarLCurrent focus
1 647 111-1 647 803 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021432165#LZF93_RS07145The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1223243
Simplified PFAM architecture for RROC_1223243
PFAM domain coverage: 152 / 230 aa (66.1%)
1 aa230 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-110] | GerE[170-222]
- Domain count: 2
- Matched identifier: RROC_1223243
- Positioned domains: Response_reg 12-110 ; GerE 170-222
Cluster members and taxonomy
Representative gene: GCF_021432165#LZF93_RS07145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_021432165
AssemblyASM2143216v1 · Complete Genomehaploid
Genome composition2 408 132 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 8 · RR 10CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key