1 Response_reg#1
4-116 aa · 113 aa · 61.1% of protein
Raw token
Response_reg:4:3.81e-18:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWF05_RS07280
Response regulator, unclassified
Clostridioides difficile · GCF_021284615
ClassRRTypeunclassifiedLength185 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021284615#LWF05_RS07280Stable P2CS identifier used across views.
GenomeGCF_021284615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length185 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 185 aa (61.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa185 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.81e-18:116:116:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021284615::NZ_JAJSNT010000142.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6545-7101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWF05_07270RefSeq proteinWP_232880198.1
Context group ID
GCF_021284615::NZ_JAJSNT010000142.1::G00010Context members
LWF05_RS07280
Partner locus tags
LWF05_RS07280
Partner old locus tags
LWF05_07270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232880198.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWF05_RS07280Primary locus identifier stored in the genes table.
Old locus tagLWF05_07270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNT010000142.1Sequence record reported by the local genomic context database.
Genomic interval6 545-7 101 nt557 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 545-7 101 ntGCF_021284615::NZ_JAJSNT010000142.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284615::NZ_JAJSNT010000142.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNT010000142.1All displayed genes belong to this local TCS context.
Neighborhood span6 545-7 101 nt557 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 545 nt7 101 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWF05_RS07280GCF_021284615#LWF05_RS07280
RRunclassifiedCurrent focus
6 545-7 101 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000242355#MUI_RS0117140Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962026
Simplified PFAM architecture for RROC_0962026
PFAM domain coverage: 204 / 237 aa (86.1%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[138-228]
- Domain count: 2
- Matched identifier: RROC_0962026
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 138-228 ; LytTR 138-228
Cluster members and taxonomy
Representative gene: GCF_000242355#MUI_RS0117140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284615
AssemblyASM2128461v1 · Contighaploid
Genome composition4 046 722 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key