1 Response_reg#1
4-96 aa · 93 aa · 36.3% of protein
Raw token
Response_reg:4:0.0000000000000581:96:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWF05_RS00280
Response regulator, FrzZ family
Clostridioides difficile · GCF_021284615
ClassRRTypeFrzZLength256 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021284615#LWF05_RS00280Stable P2CS identifier used across views.
GenomeGCF_021284615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 256 aa (80.5%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Response_reg#2
136-248 aa · 113 aa · 44.1% of protein
Raw token
Response_reg:136:0.00000000721:248:115:111- Raw architecture: Response_reg:4:0.0000000000000581:96:93:111#Response_reg:136:0.00000000721:248:115:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021284615::NZ_JAJSNT010000001.1::G00039
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span50759-51529Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWF05_00280RefSeq proteinWP_232859526.1
Context group ID
GCF_021284615::NZ_JAJSNT010000001.1::G00039Context members
LWF05_RS00280
Partner locus tags
LWF05_RS00280
Partner old locus tags
LWF05_00280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232859526.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWF05_RS00280Primary locus identifier stored in the genes table.
Old locus tagLWF05_00280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNT010000001.1Sequence record reported by the local genomic context database.
Genomic interval50 759-51 529 nt771 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 759-51 529 ntGCF_021284615::NZ_JAJSNT010000001.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284615::NZ_JAJSNT010000001.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNT010000001.1All displayed genes belong to this local TCS context.
Neighborhood span50 759-51 529 nt771 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 759 nt51 529 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWF05_RS00280GCF_021284615#LWF05_RS00280
RRFrzZCurrent focus
50 759-51 529 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021284455#LWE84_RS00005Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0676611
Simplified PFAM architecture for RROC_0676611
PFAM domain coverage: 211 / 256 aa (82.4%)
1 aa256 aa
Response_regResponse_reg
- Simplified architecture: Response_reg + Response_reg
- Raw architecture: Response_reg[4-102] | Response_reg[139-250]
- Domain count: 2
- Matched identifier: RROC_0676611
- Positioned domains: Response_reg 4-102 ; Response_reg 139-250
Cluster members and taxonomy
Representative gene: GCF_021284455#LWE84_RS00005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284615
AssemblyASM2128461v1 · Contighaploid
Genome composition4 046 722 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key