1 Response_reg#1
9-118 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:9:6.96e-31:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE98_RS12870
Response regulator OmpR family
Clostridioides difficile · GCF_021284575
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021284575#LWE98_RS12870Stable P2CS identifier used across views.
GenomeGCF_021284575Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:156:2.51e-29:232:77:77- Raw architecture: Response_reg:9:6.96e-31:118:111:111#Trans_reg_C:156:2.51e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021284575::NZ_JAJSND010000255.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span567-2725Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE98_12905RefSeq proteinWP_016728652.1
Context group ID
GCF_021284575::NZ_JAJSND010000255.1::G00036Context members
LWE98_RS12865LWE98_RS12870
Partner locus tags
LWE98_RS12865LWE98_RS12870
Partner old locus tags
LWE98_12900LWE98_12905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016728652.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE98_RS12870Primary locus identifier stored in the genes table.
Old locus tagLWE98_12905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSND010000255.1Sequence record reported by the local genomic context database.
Genomic interval2 018-2 725 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span567-2 725 ntGCF_021284575::NZ_JAJSND010000255.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284575::NZ_JAJSND010000255.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSND010000255.1All displayed genes belong to this local TCS context.
Neighborhood span567-2 725 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
567 nt2 725 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWE98_RS12865GCF_021284575#LWE98_RS12865
HKClassic
567-1 973 nt · Reverse (-)
LWE98_RS12870GCF_021284575#LWE98_RS12870
RROmpRCurrent focus
2 018-2 725 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000242355#MUI_RS0103555Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1017236
Simplified PFAM architecture for RROC_1017236
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1017236
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000242355#MUI_RS0103555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284575
AssemblyASM2128457v1 · Contighaploid
Genome composition4 114 732 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 49 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key