1 HisKA#1
107-173 aa · 67 aa · 20.4% of protein
Raw token
HisKA:107:0.0000000000000173:173:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE84_RS07855
Histidine kinase, Classic
Clostridioides difficile · GCF_021284455
ClassHKTypeClassicLength328 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021284455#LWE84_RS07855Stable P2CS identifier used across views.
GenomeGCF_021284455Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length328 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 328 aa (46.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa328 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
226-311 aa · 86 aa · 26.2% of protein
Raw token
HATPase_c:226:0.0000000662:311:90:109- Raw architecture: HisKA:107:0.0000000000000173:173:67:64#HATPase_c:226:0.0000000662:311:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021284455::NZ_JAJSNS010000110.1::G00039
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-988Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE84_07860RefSeq proteinWP_141247717.1
Context group ID
GCF_021284455::NZ_JAJSNS010000110.1::G00039Context members
LWE84_RS07855
Partner locus tags
LWE84_RS07855
Partner old locus tags
LWE84_07860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_141247717.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE84_RS07855Primary locus identifier stored in the genes table.
Old locus tagLWE84_07860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNS010000110.1Sequence record reported by the local genomic context database.
Genomic interval1-988 nt988 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-988 ntGCF_021284455::NZ_JAJSNS010000110.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284455::NZ_JAJSNS010000110.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNS010000110.1All displayed genes belong to this local TCS context.
Neighborhood span1-988 nt988 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt988 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWE84_RS07855GCF_021284455#LWE84_RS07855
HKClassicCurrent focus
1-988 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243095#DBQ06_RS06465Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1351418
Simplified PFAM architecture for HKOC_1351418
PFAM domain coverage: 191 / 532 aa (35.9%)
1 aa532 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[257-297] | HisKA[312-377] | HATPase_c[429-512]
- Domain count: 3
- Matched identifier: HKOC_1351418
- Positioned domains: HAMP 257-297 ; HisKA 312-377 ; HATPase_c 429-512
Cluster members and taxonomy
Representative gene: GCF_900243095#DBQ06_RS06465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284455
AssemblyASM2128445v1 · Contighaploid
Genome composition4 089 563 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key