1 Response_reg#1
4-113 aa · 110 aa · 49.5% of protein
Raw token
Response_reg:4:5.13e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE84_RS00070
Response regulator OmpR family
Clostridioides difficile · GCF_021284455
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021284455#LWE84_RS00070Stable P2CS identifier used across views.
GenomeGCF_021284455Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 222 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 34.2% of protein
Raw token
Trans_reg_C:146:8.59e-27:221:77:77- Raw architecture: Response_reg:4:5.13e-32:113:111:111#Trans_reg_C:146:8.59e-27:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021284455::NZ_JAJSNS010000001.1::G00046
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13102-13770Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE84_00070RefSeq proteinWP_015542939.1
Context group ID
GCF_021284455::NZ_JAJSNS010000001.1::G00046Context members
LWE84_RS00070
Partner locus tags
LWE84_RS00070
Partner old locus tags
LWE84_00070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015542939.1Primary protein accession used for annex mappings.
UniProt accessionA0A396FJ86Primary UniProt accession resolved in the annex database.
UniProt IDA0A396FJ86_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE84_RS00070Primary locus identifier stored in the genes table.
Old locus tagLWE84_00070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNS010000001.1Sequence record reported by the local genomic context database.
Genomic interval13 102-13 770 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 102-13 770 ntGCF_021284455::NZ_JAJSNS010000001.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284455::NZ_JAJSNS010000001.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span13 102-13 770 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 102 nt13 770 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWE84_RS00070GCF_021284455#LWE84_RS00070
RROmpRCurrent focus
13 102-13 770 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS14030Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637926
Simplified PFAM architecture for RROC_1637926
PFAM domain coverage: 183 / 222 aa (82.4%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-221]
- Domain count: 2
- Matched identifier: RROC_1637926
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-221 ; Trans_reg_C 149-221
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS14030
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 30 over 30 total members. Page 1 / 1.
GCF_000210015#CK5_RS14030 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284455
AssemblyASM2128445v1 · Contighaploid
Genome composition4 089 563 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key