1 HisKA#1
73-133 aa · 61 aa · 21.3% of protein
Raw token
HisKA:73:0.00000000000000478:133:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE84_RS00055
Histidine kinase, Classic
Clostridioides difficile · GCF_021284455
ClassHKTypeClassicLength287 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021284455#LWE84_RS00055Stable P2CS identifier used across views.
GenomeGCF_021284455Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length287 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage141 / 287 aa (49.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa287 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
188-267 aa · 80 aa · 27.9% of protein
Raw token
HATPase_c:188:5.83e-16:267:84:109- Raw architecture: HisKA:73:0.00000000000000478:133:61:64#HATPase_c:188:5.83e-16:267:84:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021284455::NZ_JAJSNS010000001.1::G00045
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span10423-11286Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE84_00055RefSeq proteinWP_064786730.1
Context group ID
GCF_021284455::NZ_JAJSNS010000001.1::G00045Context members
LWE84_RS00055
Partner locus tags
LWE84_RS00055
Partner old locus tags
LWE84_00055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_064786730.1Primary protein accession used for annex mappings.
UniProt accessionA0A396FGN6Primary UniProt accession resolved in the annex database.
UniProt IDA0A396FGN6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE84_RS00055Primary locus identifier stored in the genes table.
Old locus tagLWE84_00055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNS010000001.1Sequence record reported by the local genomic context database.
Genomic interval10 423-11 286 nt864 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 423-11 286 ntGCF_021284455::NZ_JAJSNS010000001.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284455::NZ_JAJSNS010000001.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span10 423-11 286 nt864 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 423 nt11 286 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWE84_RS00055GCF_021284455#LWE84_RS00055
HKClassicCurrent focus
10 423-11 286 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467405#DW885_RS04115Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2898189
Simplified PFAM architecture for HKOC_2898189
PFAM domain coverage: 144 / 287 aa (50.2%)
1 aa287 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[74-136] | HATPase_c[187-267]
- Domain count: 2
- Matched identifier: HKOC_2898189
- Positioned domains: HisKA 74-136 ; HATPase_c 187-267
Cluster members and taxonomy
Representative gene: GCF_003467405#DW885_RS04115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284455
AssemblyASM2128445v1 · Contighaploid
Genome composition4 089 563 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key