1 Response_reg#1
4-114 aa · 111 aa · 48.3% of protein
Raw token
Response_reg:4:3.91e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE84_RS00025
Response regulator OmpR family
Clostridioides difficile · GCF_021284455
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021284455#LWE84_RS00025Stable P2CS identifier used across views.
GenomeGCF_021284455Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 230 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:148:4.09e-28:224:78:77- Raw architecture: Response_reg:4:3.91e-32:114:111:111#Trans_reg_C:148:4.09e-28:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021284455::NZ_JAJSNS010000001.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4340-6060Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE84_00025RefSeq proteinWP_021632060.1
Context group ID
GCF_021284455::NZ_JAJSNS010000001.1::G00044Context members
LWE84_RS00020LWE84_RS00025
Partner locus tags
LWE84_RS00020LWE84_RS00025
Partner old locus tags
LWE84_00020LWE84_00025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021632060.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE84_RS00025Primary locus identifier stored in the genes table.
Old locus tagLWE84_00025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNS010000001.1Sequence record reported by the local genomic context database.
Genomic interval5 368-6 060 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 340-6 060 ntGCF_021284455::NZ_JAJSNS010000001.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284455::NZ_JAJSNS010000001.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span4 340-6 060 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 340 nt6 060 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWE84_RS00020GCF_021284455#LWE84_RS00020
HKClassic
4 340-5 371 nt · Reverse (-)
LWE84_RS00025GCF_021284455#LWE84_RS00025
RROmpRCurrent focus
5 368-6 060 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS09860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1205250
Simplified PFAM architecture for RROC_1205250
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1205250
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS09860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284455
AssemblyASM2128445v1 · Contighaploid
Genome composition4 089 563 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key