1 HisKA#1
123-188 aa · 66 aa · 19.1% of protein
Raw token
HisKA:123:0.00000000157:188:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE80_RS07300
Histidine kinase, Classic
Clostridioides difficile · GCF_021284445
ClassHKTypeClassicLength345 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021284445#LWE80_RS07300Stable P2CS identifier used across views.
GenomeGCF_021284445Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length345 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 345 aa (49.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa345 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
234-337 aa · 104 aa · 30.1% of protein
Raw token
HATPase_c:234:5.1e-28:337:104:109- Raw architecture: HisKA:123:0.00000000157:188:66:64#HATPase_c:234:5.1e-28:337:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021284445::NZ_JAJSOC010000046.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7544-9276Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE80_07290RefSeq proteinWP_032554265.1
Context group ID
GCF_021284445::NZ_JAJSOC010000046.1::G00005Context members
LWE80_RS07300LWE80_RS07305
Partner locus tags
LWE80_RS07300LWE80_RS07305
Partner old locus tags
LWE80_07290LWE80_07295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032554265.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE80_RS07300Primary locus identifier stored in the genes table.
Old locus tagLWE80_07290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSOC010000046.1Sequence record reported by the local genomic context database.
Genomic interval7 544-8 581 nt1 038 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 544-9 276 ntGCF_021284445::NZ_JAJSOC010000046.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284445::NZ_JAJSOC010000046.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSOC010000046.1All displayed genes belong to this local TCS context.
Neighborhood span7 544-9 276 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 544 nt9 276 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWE80_RS07300GCF_021284445#LWE80_RS07300
HKClassicCurrent focus
7 544-8 581 nt · Reverse (-)
LWE80_RS07305GCF_021284445#LWE80_RS07305
RROmpR
8 590-9 276 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000531165#BN166_RS00120Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2819252
Simplified PFAM architecture for HKOC_2819252
PFAM domain coverage: 171 / 345 aa (49.6%)
1 aa345 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-188] | HATPase_c[234-339]
- Domain count: 2
- Matched identifier: HKOC_2819252
- Positioned domains: HisKA 124-188 ; HATPase_c 234-339
Cluster members and taxonomy
Representative gene: GCF_000531165#BN166_RS00120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284445
AssemblyASM2128444v1 · Contighaploid
Genome composition3 956 132 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key