1 Response_reg#1
2-113 aa · 112 aa · 56.3% of protein
Raw token
Response_reg:2:5.72e-16:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE80_RS05180
Response regulator NarL family
Clostridioides difficile · GCF_021284445
ClassRRTypeNarLLength199 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021284445#LWE80_RS05180Stable P2CS identifier used across views.
GenomeGCF_021284445Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length199 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 199 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
133-189 aa · 57 aa · 28.6% of protein
Raw token
HTH_LUXR:133:1.37e-19:189:57:58- Raw architecture: Response_reg:2:5.72e-16:113:113:111#HTH_LUXR:133:1.37e-19:189:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021284445::NZ_JAJSOC010000029.1::G00050
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14607-15206Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE80_05175RefSeq proteinWP_306437153.1
Context group ID
GCF_021284445::NZ_JAJSOC010000029.1::G00050Context members
LWE80_RS05180
Partner locus tags
LWE80_RS05180
Partner old locus tags
LWE80_05175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306437153.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE80_RS05180Primary locus identifier stored in the genes table.
Old locus tagLWE80_05175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSOC010000029.1Sequence record reported by the local genomic context database.
Genomic interval14 607-15 206 nt600 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 607-15 206 ntGCF_021284445::NZ_JAJSOC010000029.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284445::NZ_JAJSOC010000029.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSOC010000029.1All displayed genes belong to this local TCS context.
Neighborhood span14 607-15 206 nt600 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 607 nt15 206 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWE80_RS05180GCF_021284445#LWE80_RS05180
RRNarLCurrent focus
14 607-15 206 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000531165#BN166_RS00185Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2143864
Simplified PFAM architecture for RROC_2143864
PFAM domain coverage: 168 / 199 aa (84.4%)
1 aa199 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-113] | GerE[134-189]
- Domain count: 2
- Matched identifier: RROC_2143864
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; GerE 134-189 ; GerE 134-189
Cluster members and taxonomy
Representative gene: GCF_000531165#BN166_RS00185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284445
AssemblyASM2128444v1 · Contighaploid
Genome composition3 956 132 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key