1 HisKA_3#1
117-182 aa · 66 aa · 20.9% of protein
Raw token
HisKA_3:117:1.28e-20:182:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWF08_RS07000
Histidine kinase, Classic
Clostridioides difficile · GCF_021284415
ClassHKTypeClassicLength316 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021284415#LWF08_RS07000Stable P2CS identifier used across views.
GenomeGCF_021284415Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length316 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 316 aa (47.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa316 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
223-307 aa · 85 aa · 26.9% of protein
Raw token
HATPase_c:223:0.0000000000951:307:104:109- Raw architecture: HisKA_3:117:1.28e-20:182:67:68#HATPase_c:223:0.0000000000951:307:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021284415::NZ_JAJSNN010000131.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6533-8125Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWF08_07015RefSeq proteinWP_232857877.1
Context group ID
GCF_021284415::NZ_JAJSNN010000131.1::G00028Context members
LWF08_RS06995LWF08_RS07000
Partner locus tags
LWF08_RS06995LWF08_RS07000
Partner old locus tags
LWF08_07010LWF08_07015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232857877.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWF08_RS07000Primary locus identifier stored in the genes table.
Old locus tagLWF08_07015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNN010000131.1Sequence record reported by the local genomic context database.
Genomic interval7 173-8 125 nt953 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 533-8 125 ntGCF_021284415::NZ_JAJSNN010000131.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284415::NZ_JAJSNN010000131.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNN010000131.1All displayed genes belong to this local TCS context.
Neighborhood span6 533-8 125 nt1 593 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 533 nt8 125 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWF08_RS06995GCF_021284415#LWF08_RS06995
RRNarL
6 533-7 180 nt · Reverse (-)
LWF08_RS07000GCF_021284415#LWF08_RS07000
HKClassicCurrent focus
7 173-8 125 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000242355#MUI_RS0117880Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550189
Simplified PFAM architecture for HKOC_2550189
PFAM domain coverage: 150 / 387 aa (38.8%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-252] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550189
- Positioned domains: HisKA_3 188-252 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000242355#MUI_RS0117880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284415
AssemblyASM2128441v1 · Contighaploid
Genome composition4 203 080 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 50 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key