1 HisKA#1
82-144 aa · 63 aa · 20.9% of protein
Raw token
HisKA:82:0.000000074:144:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWF08_RS03980
Histidine kinase, Classic
Clostridioides difficile · GCF_021284415
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021284415#LWF08_RS03980Stable P2CS identifier used across views.
GenomeGCF_021284415Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 302 aa (54.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-295 aa · 100 aa · 33.1% of protein
Raw token
HATPase_c:196:2.14e-22:295:100:109- Raw architecture: HisKA:82:0.000000074:144:63:64#HATPase_c:196:2.14e-22:295:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021284415::NZ_JAJSNN010000061.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9524-11105Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWF08_03980RefSeq proteinWP_016729031.1
Context group ID
GCF_021284415::NZ_JAJSNN010000061.1::G00042Context members
LWF08_RS03980LWF08_RS03985
Partner locus tags
LWF08_RS03980LWF08_RS03985
Partner old locus tags
LWF08_03980LWF08_03985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016729031.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWF08_RS03980Primary locus identifier stored in the genes table.
Old locus tagLWF08_03980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNN010000061.1Sequence record reported by the local genomic context database.
Genomic interval9 524-10 432 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 524-11 105 ntGCF_021284415::NZ_JAJSNN010000061.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284415::NZ_JAJSNN010000061.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNN010000061.1All displayed genes belong to this local TCS context.
Neighborhood span9 524-11 105 nt1 582 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 524 nt11 105 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWF08_RS03980GCF_021284415#LWF08_RS03980
HKClassicCurrent focus
9 524-10 432 nt · Reverse (-)
LWF08_RS03985GCF_021284415#LWF08_RS03985
RROmpR
10 434-11 105 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034188235#SQ514_RS09400Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2883605
Simplified PFAM architecture for HKOC_2883605
PFAM domain coverage: 165 / 304 aa (54.3%)
1 aa304 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[84-146] | HATPase_c[197-298]
- Domain count: 2
- Matched identifier: HKOC_2883605
- Positioned domains: HisKA 84-146 ; HATPase_c 197-298
Cluster members and taxonomy
Representative gene: GCF_034188235#SQ514_RS09400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284415
AssemblyASM2128441v1 · Contighaploid
Genome composition4 203 080 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 50 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key