1 Response_reg#1
4-114 aa · 111 aa · 47.0% of protein
Raw token
Response_reg:4:3.92e-20:114:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE89_RS06125
Response regulator LytTR family
Clostridioides difficile · GCF_021284375
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021284375#LWE89_RS06125Stable P2CS identifier used across views.
GenomeGCF_021284375Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 236 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-227 aa · 88 aa · 37.3% of protein
Raw token
LytTR:140:9.42e-25:227:93:98- Raw architecture: Response_reg:4:3.92e-20:114:114:111#LytTR:140:9.42e-25:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021284375::NZ_JAJSNV010000036.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span16646-17356Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE89_06125RefSeq proteinWP_003422387.1
Context group ID
GCF_021284375::NZ_JAJSNV010000036.1::G00036Context members
LWE89_RS06125
Partner locus tags
LWE89_RS06125
Partner old locus tags
LWE89_06125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003422387.1Primary protein accession used for annex mappings.
UniProt accessionD5Q828Primary UniProt accession resolved in the annex database.
UniProt IDD5Q828_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE89_RS06125Primary locus identifier stored in the genes table.
Old locus tagLWE89_06125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNV010000036.1Sequence record reported by the local genomic context database.
Genomic interval16 646-17 356 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 646-17 356 ntGCF_021284375::NZ_JAJSNV010000036.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284375::NZ_JAJSNV010000036.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNV010000036.1All displayed genes belong to this local TCS context.
Neighborhood span16 646-17 356 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 646 nt17 356 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWE89_RS06125GCF_021284375#LWE89_RS06125
RRLytTRCurrent focus
16 646-17 356 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0215245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988510
Simplified PFAM architecture for RROC_0988510
PFAM domain coverage: 201 / 236 aa (85.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[139-226]
- Domain count: 2
- Matched identifier: RROC_0988510
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 139-226 ; LytTR 139-226
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0215245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284375
AssemblyASM2128437v1 · Contighaploid
Genome composition3 909 647 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key