1 HisKA#1
206-271 aa · 66 aa · 15.4% of protein
Raw token
HisKA:206:0.0000000116:271:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE82_RS07235
Histidine kinase, Classic
Clostridioides difficile · GCF_021284365
ClassHKTypeClassicLength428 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021284365#LWE82_RS07235Stable P2CS identifier used across views.
GenomeGCF_021284365Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length428 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 428 aa (39.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa428 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
322-425 aa · 104 aa · 24.3% of protein
Raw token
HATPase_c:322:8.6e-30:425:104:109- Raw architecture: HisKA:206:0.0000000116:271:66:64#HATPase_c:322:8.6e-30:425:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021284365::NZ_JAJSNW010000042.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21150-23166Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE82_07235RefSeq proteinWP_223380659.1
Context group ID
GCF_021284365::NZ_JAJSNW010000042.1::G00040Context members
LWE82_RS07235LWE82_RS07240
Partner locus tags
LWE82_RS07235LWE82_RS07240
Partner old locus tags
LWE82_07235LWE82_07240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_223380659.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE82_RS07235Primary locus identifier stored in the genes table.
Old locus tagLWE82_07235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNW010000042.1Sequence record reported by the local genomic context database.
Genomic interval21 150-22 436 nt1 287 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 150-23 166 ntGCF_021284365::NZ_JAJSNW010000042.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284365::NZ_JAJSNW010000042.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNW010000042.1All displayed genes belong to this local TCS context.
Neighborhood span21 150-23 166 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 150 nt23 166 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWE82_RS07235GCF_021284365#LWE82_RS07235
HKClassicCurrent focus
21 150-22 436 nt · Forward (+)
LWE82_RS07240GCF_021284365#LWE82_RS07240
RROmpR
22 486-23 166 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0216030Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842458
Simplified PFAM architecture for HKOC_0842458
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0842458
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0216030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284365
AssemblyASM2128436v1 · Contighaploid
Genome composition4 017 991 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key