1 HisKA#1
244-308 aa · 65 aa · 14.0% of protein
Raw token
HisKA:244:0.0000000000023:308:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE82_RS02430
Histidine kinase, Classic
Clostridioides difficile · GCF_021284365
ClassHKTypeClassicLength465 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021284365#LWE82_RS02430Stable P2CS identifier used across views.
GenomeGCF_021284365Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length465 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 465 aa (37.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa465 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
355-463 aa · 109 aa · 23.4% of protein
Raw token
HATPase_c:355:1.49e-19:463:109:109- Raw architecture: HisKA:244:0.0000000000023:308:65:64#HATPase_c:355:1.49e-19:463:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021284365::NZ_JAJSNW010000011.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span8994-10385Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE82_02430RefSeq proteinWP_029158131.1
Context group ID
GCF_021284365::NZ_JAJSNW010000011.1::G00015Context members
LWE82_RS02430
Partner locus tags
LWE82_RS02430
Partner old locus tags
LWE82_02430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_029158131.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE82_RS02430Primary locus identifier stored in the genes table.
Old locus tagLWE82_02430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNW010000011.1Sequence record reported by the local genomic context database.
Genomic interval8 994-10 385 nt1 392 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 994-10 385 ntGCF_021284365::NZ_JAJSNW010000011.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284365::NZ_JAJSNW010000011.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNW010000011.1All displayed genes belong to this local TCS context.
Neighborhood span8 994-10 385 nt1 392 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 994 nt10 385 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWE82_RS02430GCF_021284365#LWE82_RS02430
HKClassicCurrent focus
8 994-10 385 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0206615Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1772967
Simplified PFAM architecture for HKOC_1772967
PFAM domain coverage: 174 / 465 aa (37.4%)
1 aa465 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[244-308] | HATPase_c[355-463]
- Domain count: 2
- Matched identifier: HKOC_1772967
- Positioned domains: HisKA 244-308 ; HATPase_c 355-463
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0206615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284365
AssemblyASM2128436v1 · Contighaploid
Genome composition4 017 991 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key