1 Response_reg#1
8-116 aa · 109 aa · 46.0% of protein
Raw token
Response_reg:8:4.52e-29:116:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE97_RS12675
Response regulator OmpR family
Clostridioides difficile · GCF_021284345
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021284345#LWE97_RS12675Stable P2CS identifier used across views.
GenomeGCF_021284345Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-228 aa · 78 aa · 32.9% of protein
Raw token
Trans_reg_C:151:1.78e-30:228:78:77- Raw architecture: Response_reg:8:4.52e-29:116:110:111#Trans_reg_C:151:1.78e-30:228:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021284345::NZ_JAJSNO010000268.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1946Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE97_12700RefSeq proteinWP_331472944.1
Context group ID
GCF_021284345::NZ_JAJSNO010000268.1::G00027Context members
LWE97_RS12675LWE97_RS12680
Partner locus tags
LWE97_RS12675LWE97_RS12680
Partner old locus tags
LWE97_12700LWE97_12705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_331472944.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE97_RS12675Primary locus identifier stored in the genes table.
Old locus tagLWE97_12700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNO010000268.1Sequence record reported by the local genomic context database.
Genomic interval1-715 nt715 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 946 ntGCF_021284345::NZ_JAJSNO010000268.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284345::NZ_JAJSNO010000268.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNO010000268.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 946 nt1 946 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 946 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWE97_RS12675GCF_021284345#LWE97_RS12675
RROmpRCurrent focus
1-715 nt · Forward (+)
LWE97_RS12680GCF_021284345#LWE97_RS12680
HKClassic
693-1 946 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0209045Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862776
Simplified PFAM architecture for RROC_0862776
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0862776
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0209045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284345
AssemblyASM2128434v1 · Contighaploid
Genome composition4 244 082 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 50 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key