1 H-kinase_dim#1
47-108 aa · 62 aa · 14.3% of protein
Raw token
H-kinase_dim:47:0.00000000000000366:108:67:67P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE97_RS11660
Histidine kinase, CheA
Clostridioides difficile · GCF_021284345
ClassHKTypeCheALength435 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021284345#LWE97_RS11660Stable P2CS identifier used across views.
GenomeGCF_021284345Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
H-kinase_dimHATPase_cCheW
Protein length435 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage337 / 435 aa (77.5%)Merged over positioned domains only.
Domain description1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa435 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
155-294 aa · 140 aa · 32.2% of protein
Raw token
HATPase_c:155:7.18e-17:294:140:1093 CheW#3
299-433 aa · 135 aa · 31.0% of protein
Raw token
CheW:299:5.07e-22:433:136:138- Raw architecture: H-kinase_dim:47:0.00000000000000366:108:67:67#HATPase_c:155:7.18e-17:294:140:109#CheW:299:5.07e-22:433:136:138
- Domain description: 1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021284345::NZ_JAJSNO010000231.1::G00032
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1309Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE97_11680RefSeq proteinWP_232887585.1
Context group ID
GCF_021284345::NZ_JAJSNO010000231.1::G00032Context members
LWE97_RS11660
Partner locus tags
LWE97_RS11660
Partner old locus tags
LWE97_11680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232887585.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE97_RS11660Primary locus identifier stored in the genes table.
Old locus tagLWE97_11680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNO010000231.1Sequence record reported by the local genomic context database.
Genomic interval1-1 309 nt1 309 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 309 ntGCF_021284345::NZ_JAJSNO010000231.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284345::NZ_JAJSNO010000231.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNO010000231.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 309 nt1 309 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 309 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWE97_RS11660GCF_021284345#LWE97_RS11660
HKCheACurrent focus
1-1 309 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS03265Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0768912
Simplified PFAM architecture for HKOC_0768912
PFAM domain coverage: 513 / 700 aa (73.3%)
1 aa700 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[3-104] | P2[164-240] | H-kinase_dim[312-373] | HATPase_c[422-559] | CheW[565-698]
- Domain count: 5
- Matched identifier: HKOC_0768912
- Positioned domains: Hpt 3-104 ; P2 164-240 ; H-kinase_dim 312-373 ; HATPase_c 422-559 ; CheW 565-698
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS03265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284345
AssemblyASM2128434v1 · Contighaploid
Genome composition4 244 082 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 50 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key