1 Response_reg#1
4-116 aa · 113 aa · 70.6% of protein
Raw token
Response_reg:4:1.95e-17:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE83_RS05890
Response regulator, CheY family
Clostridioides difficile · GCF_021284065
ClassRRTypeCheYLength160 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021284065#LWE83_RS05890Stable P2CS identifier used across views.
GenomeGCF_021284065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length160 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 160 aa (70.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa160 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.95e-17:116:116:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021284065::NZ_JAJSNL010000079.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9728-10207Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE83_05895RefSeq proteinWP_232914720.1
Context group ID
GCF_021284065::NZ_JAJSNL010000079.1::G00047Context members
LWE83_RS05890
Partner locus tags
LWE83_RS05890
Partner old locus tags
LWE83_05895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232914720.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE83_RS05890Primary locus identifier stored in the genes table.
Old locus tagLWE83_05895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNL010000079.1Sequence record reported by the local genomic context database.
Genomic interval9 728-10 207 nt480 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 728-10 207 ntGCF_021284065::NZ_JAJSNL010000079.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284065::NZ_JAJSNL010000079.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNL010000079.1All displayed genes belong to this local TCS context.
Neighborhood span9 728-10 207 nt480 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 728 nt10 207 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWE83_RS05890GCF_021284065#LWE83_RS05890
RRCheYCurrent focus
9 728-10 207 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0205380Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961606
Simplified PFAM architecture for RROC_0961606
PFAM domain coverage: 204 / 237 aa (86.1%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[138-228]
- Domain count: 2
- Matched identifier: RROC_0961606
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 138-228 ; LytTR 138-228
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0205380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284065
AssemblyASM2128406v1 · Contighaploid
Genome composition3 893 154 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 46 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key