1 Response_reg#1
5-114 aa · 110 aa · 90.2% of protein
Raw token
Response_reg:5:1.9e-19:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE87_RS18400
Response regulator, CheY family
Clostridioides difficile · GCF_021283725
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021283725#LWE87_RS18400Stable P2CS identifier used across views.
GenomeGCF_021283725Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 122 aa (90.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa122 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.9e-19:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021283725::NZ_JAJSMV010000612.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE87_18405RefSeq proteinWP_232883712.1
Context group ID
GCF_021283725::NZ_JAJSMV010000612.1::G00004Context members
LWE87_RS18400
Partner locus tags
LWE87_RS18400
Partner old locus tags
LWE87_18405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232883712.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE87_RS18400Primary locus identifier stored in the genes table.
Old locus tagLWE87_18405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSMV010000612.1Sequence record reported by the local genomic context database.
Genomic interval1-367 nt367 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-367 ntGCF_021283725::NZ_JAJSMV010000612.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021283725::NZ_JAJSMV010000612.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSMV010000612.1All displayed genes belong to this local TCS context.
Neighborhood span1-367 nt367 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt367 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWE87_RS18400GCF_021283725#LWE87_RS18400
RRCheYCurrent focus
1-367 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS11125Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407978
Simplified PFAM architecture for RROC_1407978
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1407978
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS11125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021283725
AssemblyASM2128372v1 · Contighaploid
Genome composition3 985 733 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key