1 HisKA#1
78-125 aa · 48 aa · 16.6% of protein
Raw token
HisKA:78:0.000000781:125:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE87_RS14490
Histidine kinase, Classic
Clostridioides difficile · GCF_021283725
ClassHKTypeClassicLength289 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021283725#LWE87_RS14490Stable P2CS identifier used across views.
GenomeGCF_021283725Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length289 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 289 aa (54.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa289 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
171-279 aa · 109 aa · 37.7% of protein
Raw token
HATPase_c:171:4.46e-23:279:109:109- Raw architecture: HisKA:78:0.000000781:125:53:64#HATPase_c:171:4.46e-23:279:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021283725::NZ_JAJSMV010000288.1::G00025
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-872Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE87_14495RefSeq proteinWP_232860255.1
Context group ID
GCF_021283725::NZ_JAJSMV010000288.1::G00025Context members
LWE87_RS14490
Partner locus tags
LWE87_RS14490
Partner old locus tags
LWE87_14495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232860255.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE87_RS14490Primary locus identifier stored in the genes table.
Old locus tagLWE87_14495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSMV010000288.1Sequence record reported by the local genomic context database.
Genomic interval1-872 nt872 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-872 ntGCF_021283725::NZ_JAJSMV010000288.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021283725::NZ_JAJSMV010000288.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSMV010000288.1All displayed genes belong to this local TCS context.
Neighborhood span1-872 nt872 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt872 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWE87_RS14490GCF_021283725#LWE87_RS14490
HKClassicCurrent focus
1-872 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301075#BGU05_RS01780Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2850082
Simplified PFAM architecture for HKOC_2850082
PFAM domain coverage: 109 / 334 aa (32.6%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[217-325]
- Domain count: 1
- Matched identifier: HKOC_2850082
- Positioned domains: HATPase_c 217-325
Cluster members and taxonomy
Representative gene: GCF_002301075#BGU05_RS01780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021283725
AssemblyASM2128372v1 · Contighaploid
Genome composition3 985 733 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key