1 HAMP#1
110-177 aa · 68 aa · 16.8% of protein
Raw token
HAMP:110:0.00000000000473:177:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE71_RS17115
Histidine kinase, Classic
Clostridioides difficile · GCF_021283685
ClassHKTypeClassicLength404 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021283685#LWE71_RS17115Stable P2CS identifier used across views.
GenomeGCF_021283685Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length404 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage213 / 404 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
189-248 aa · 60 aa · 14.9% of protein
Raw token
HisKA:189:0.000000000196:248:61:643 HATPase_c#3
295-379 aa · 85 aa · 21.0% of protein
Raw token
HATPase_c:295:0.00000000000000107:379:88:109- Raw architecture: HAMP:110:0.00000000000473:177:68:69#HisKA:189:0.000000000196:248:61:64#HATPase_c:295:0.00000000000000107:379:88:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021283685::NZ_JAJSMQ010000696.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1216Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE71_17150RefSeq proteinWP_232922752.1
Context group ID
GCF_021283685::NZ_JAJSMQ010000696.1::G00038Context members
LWE71_RS17115
Partner locus tags
LWE71_RS17115
Partner old locus tags
LWE71_17150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232922752.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE71_RS17115Primary locus identifier stored in the genes table.
Old locus tagLWE71_17150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSMQ010000696.1Sequence record reported by the local genomic context database.
Genomic interval1-1 216 nt1 216 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 216 ntGCF_021283685::NZ_JAJSMQ010000696.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021283685::NZ_JAJSMQ010000696.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSMQ010000696.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 216 nt1 216 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 216 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LWE71_RS17115GCF_021283685#LWE71_RS17115
HKClassicCurrent focus
1-1 216 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0202465Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1783726
Simplified PFAM architecture for HKOC_1783726
PFAM domain coverage: 195 / 464 aa (42.0%)
1 aa464 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[187-236] | HisKA[250-308] | HATPase_c[355-440]
- Domain count: 3
- Matched identifier: HKOC_1783726
- Positioned domains: HAMP 187-236 ; HisKA 250-308 ; HATPase_c 355-440
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0202465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021283685
AssemblyASM2128368v1 · Contighaploid
Genome composition3 837 771 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 46 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key