1 Response_reg#1
4-119 aa · 116 aa · 22.0% of protein
Raw token
Response_reg:4:3.43e-28:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IV419_RS07470
Response regulator, unclassified
Enterococcus faecium · GCF_021123075
ClassRRTypeunclassifiedLength528 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021123075#IV419_RS07470Stable P2CS identifier used across views.
GenomeGCF_021123075Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length528 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage197 / 528 aa (37.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa528 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
420-462 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:420:0.00000222:462:43:423 HTH_AraC#3
475-512 aa · 38 aa · 7.2% of protein
Raw token
HTH_AraC:475:0.0000000111:512:38:42- Raw architecture: Response_reg:4:3.43e-28:119:117:111#HTH_AraC:420:0.00000222:462:43:42#HTH_AraC:475:0.0000000111:512:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021123075::NZ_JADMFS010000011.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46738-49768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIV419_07420RefSeq proteinWP_231411459.1
Context group ID
GCF_021123075::NZ_JADMFS010000011.1::G00002Context members
IV419_RS07465IV419_RS07470
Partner locus tags
IV419_RS07465IV419_RS07470
Partner old locus tags
IV419_07415IV419_07420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231411459.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIV419_RS07470Primary locus identifier stored in the genes table.
Old locus tagIV419_07420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADMFS010000011.1Sequence record reported by the local genomic context database.
Genomic interval48 182-49 768 nt1 587 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 738-49 768 ntGCF_021123075::NZ_JADMFS010000011.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021123075::NZ_JADMFS010000011.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMFS010000011.1All displayed genes belong to this local TCS context.
Neighborhood span46 738-49 768 nt3 031 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 738 nt49 768 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IV419_RS07465GCF_021123075#IV419_RS07465
HKClassic
46 738-48 189 nt · Forward (+)
IV419_RS07470GCF_021123075#IV419_RS07470
RRunclassifiedCurrent focus
48 182-49 768 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021123075#IV419_RS07470The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0115165
Simplified PFAM architecture for RROC_0115165
PFAM domain coverage: 194 / 528 aa (36.7%)
1 aa528 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-119] | HTH_18[435-512]
- Domain count: 2
- Matched identifier: RROC_0115165
- Positioned domains: Response_reg 4-119 ; HTH_18 435-512
Cluster members and taxonomy
Representative gene: GCF_021123075#IV419_RS07470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_021123075
AssemblyASM2112307v1 · Contighaploid
Genome composition2 779 948 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 38 · HK 19 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key