1 HAMP#1
35-104 aa · 70 aa · 19.8% of protein
Raw token
HAMP:35:0.00000000000000316:104:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AR454_RS22985
Histidine kinase, Classic
Bacillus mycoides · GCF_021097345
ClassHKTypeClassicLength354 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021097345#AR454_RS22985Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length354 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 354 aa (70.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa354 aa
Domain-by-domain annotation3 items
2 HisKA#2
129-194 aa · 66 aa · 18.6% of protein
Raw token
HisKA:129:0.00000000000108:194:66:643 HATPase_c#3
240-353 aa · 114 aa · 32.2% of protein
Raw token
HATPase_c:240:1.21e-16:353:116:109- Raw architecture: HAMP:35:0.00000000000000316:104:70:69#HisKA:129:0.00000000000108:194:66:64#HATPase_c:240:1.21e-16:353:116:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021097345::NZ_LLZX01000171.1::G00053
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span33640-34704Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAR454_27910RefSeq proteinWP_231348529.1
Context group ID
GCF_021097345::NZ_LLZX01000171.1::G00053Context members
AR454_RS22985
Partner locus tags
AR454_RS22985
Partner old locus tags
AR454_27910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231348529.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAR454_RS22985Primary locus identifier stored in the genes table.
Old locus tagAR454_27910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LLZX01000171.1Sequence record reported by the local genomic context database.
Genomic interval33 640-34 704 nt1 065 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 640-34 704 ntGCF_021097345::NZ_LLZX01000171.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021097345::NZ_LLZX01000171.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LLZX01000171.1All displayed genes belong to this local TCS context.
Neighborhood span33 640-34 704 nt1 065 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 640 nt34 704 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AR454_RS22985GCF_021097345#AR454_RS22985
HKClassicCurrent focus
33 640-34 704 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042884815#ACFVT4_RS20685Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1333419
Simplified PFAM architecture for HKOC_1333419
PFAM domain coverage: 227 / 537 aa (42.3%)
1 aa537 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[236-287] | HisKA[313-377] | HATPase_c[426-535]
- Domain count: 3
- Matched identifier: HKOC_1333419
- Positioned domains: HAMP 236-287 ; HisKA 313-377 ; HATPase_c 426-535
Cluster members and taxonomy
Representative gene: GCF_042884815#ACFVT4_RS20685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_021097345
AssemblyASM2109734v1 · Scaffoldhaploid
Genome composition5 781 761 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 63 · RR 58CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key