1 Response_reg#1
5-84 aa · 80 aa · 95.2% of protein
Raw token
Response_reg:5:4.11e-30:84:81:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AR454_RS15195
Response regulator, CheY family
Bacillus mycoides · GCF_021097345
ClassRRTypeCheYLength84 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021097345#AR454_RS15195Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length84 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage80 / 84 aa (95.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa84 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:4.11e-30:84:81:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021097345::NZ_LLZX01000122.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6080-7874Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_021097345::NZ_LLZX01000122.1::G00038Context members
AR454_RS15195AR454_RS15205
Partner locus tags
AR454_RS15195AR454_RS15205
Partner old locus tags
AR454_21705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231348310.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAR454_RS15195Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LLZX01000122.1Sequence record reported by the local genomic context database.
Genomic interval6 080-6 331 nt252 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 080-7 874 ntGCF_021097345::NZ_LLZX01000122.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021097345::NZ_LLZX01000122.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LLZX01000122.1All displayed genes belong to this local TCS context.
Neighborhood span6 080-7 874 nt1 795 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 080 nt7 874 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AR454_RS15195GCF_021097345#AR454_RS15195
RRCheYCurrent focus
6 080-6 331 nt · Forward (+)
AR454_RS15205GCF_021097345#AR454_RS15205
HKClassic
6 795-7 874 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS28335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961668
Simplified PFAM architecture for RROC_0961668
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0961668
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS28335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_021097345
AssemblyASM2109734v1 · Scaffoldhaploid
Genome composition5 781 761 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 63 · RR 58CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key