1 GAF#1
23-163 aa · 141 aa · 21.1% of protein
Raw token
GAF:23:8.59e-16:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AR454_RS03285
Histidine kinase, Classic
Bacillus mycoides · GCF_021097345
ClassHKTypeClassicLength669 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021097345#AR454_RS03285Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFPAS_9HisKAHATPase_c
Protein length669 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage392 / 669 aa (58.6%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa669 aa
Domain-by-domain annotation4 items
2 PAS_9#2
344-438 aa · 95 aa · 14.2% of protein
Raw token
PAS_9:344:0.00000293:438:107:1023 HisKA#3
456-513 aa · 58 aa · 8.7% of protein
Raw token
HisKA:456:0.0000000000000114:513:58:644 HATPase_c#4
565-662 aa · 98 aa · 14.6% of protein
Raw token
HATPase_c:565:3.32e-19:662:103:109- Raw architecture: GAF:23:8.59e-16:163:143:133#PAS_9:344:0.00000293:438:107:102#HisKA:456:0.0000000000000114:513:58:64#HATPase_c:565:3.32e-19:662:103:109
- Domain description: 1 GAF,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021097345::NZ_LLZX01000029.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span28340-30349Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAR454_01155RefSeq proteinWP_231347846.1
Context group ID
GCF_021097345::NZ_LLZX01000029.1::G00013Context members
AR454_RS03285
Partner locus tags
AR454_RS03285
Partner old locus tags
AR454_01155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231347846.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAR454_RS03285Primary locus identifier stored in the genes table.
Old locus tagAR454_01155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LLZX01000029.1Sequence record reported by the local genomic context database.
Genomic interval28 340-30 349 nt2 010 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 340-30 349 ntGCF_021097345::NZ_LLZX01000029.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021097345::NZ_LLZX01000029.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LLZX01000029.1All displayed genes belong to this local TCS context.
Neighborhood span28 340-30 349 nt2 010 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 340 nt30 349 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AR454_RS03285GCF_021097345#AR454_RS03285
HKClassicCurrent focus
28 340-30 349 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021097345#AR454_RS03285The current gene is the representative for this cluster.
PFAM architectureGAF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0849630
Simplified PFAM architecture for HKOC_0849630
PFAM domain coverage: 300 / 669 aa (44.8%)
1 aa669 aa
GAFHisKAHATPase_c
- Simplified architecture: GAF + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | HisKA[456-513] | HATPase_c[562-663]
- Domain count: 3
- Matched identifier: HKOC_0849630
- Positioned domains: GAF 24-163 ; HisKA 456-513 ; HATPase_c 562-663
Cluster members and taxonomy
Representative gene: GCF_021097345#AR454_RS03285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_021097345
AssemblyASM2109734v1 · Scaffoldhaploid
Genome composition5 781 761 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 63 · RR 58CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key