1 Response_reg#1
13-122 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:13:3.13e-33:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AR454_RS02055
Response regulator OmpR family
Bacillus mycoides · GCF_021097345
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_021097345#AR454_RS02055Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 228 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-226 aa · 70 aa · 30.7% of protein
Raw token
Trans_reg_C:157:1.94e-29:226:75:77- Raw architecture: Response_reg:13:3.13e-33:122:111:111#Trans_reg_C:157:1.94e-29:226:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_021097345::NZ_LLZX01000023.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span262-948Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAR454_11650RefSeq proteinWP_231347765.1
Context group ID
GCF_021097345::NZ_LLZX01000023.1::G00008Context members
AR454_RS02055
Partner locus tags
AR454_RS02055
Partner old locus tags
AR454_11650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231347765.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAR454_RS02055Primary locus identifier stored in the genes table.
Old locus tagAR454_11650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LLZX01000023.1Sequence record reported by the local genomic context database.
Genomic interval262-948 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span262-948 ntGCF_021097345::NZ_LLZX01000023.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021097345::NZ_LLZX01000023.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LLZX01000023.1All displayed genes belong to this local TCS context.
Neighborhood span262-948 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
262 nt948 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AR454_RS02055GCF_021097345#AR454_RS02055
RROmpRCurrent focus
262-948 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021097345#AR454_RS02055The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1328292
Simplified PFAM architecture for RROC_1328292
PFAM domain coverage: 178 / 228 aa (78.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-121] | Trans_reg_C[157-225]
- Domain count: 2
- Matched identifier: RROC_1328292
- Positioned domains: Response_reg 13-121 ; Trans_reg_C 157-225
Cluster members and taxonomy
Representative gene: GCF_021097345#AR454_RS02055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_021097345
AssemblyASM2109734v1 · Scaffoldhaploid
Genome composition5 781 761 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 63 · RR 58CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key