1 HisKA_3#1
247-305 aa · 59 aa · 7.2% of protein
Raw token
HisKA_3:247:4.98e-16:305:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LPH37_RS01220
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_020982785
ClassHKTypeClassicLength822 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020982785#LPH37_RS01220Stable P2CS identifier used across views.
GenomeGCF_020982785Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length822 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 822 aa (27.3%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
348-441 aa · 94 aa · 11.4% of protein
Raw token
HATPase_c:348:0.000000000000266:441:110:1093 HisKA_3#3
698-768 aa · 71 aa · 8.6% of protein
Raw token
HisKA_3:698:0.0000083:768:71:68- Raw architecture: HisKA_3:247:4.98e-16:305:59:68#HATPase_c:348:0.000000000000266:441:110:109#HisKA_3:698:0.0000083:768:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020982785::NZ_JAJKHM010000002.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62937-66317Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLPH37_01220RefSeq proteinWP_227248145.1
Context group ID
GCF_020982785::NZ_JAJKHM010000002.1::G00010Context members
LPH37_RS01215LPH37_RS01220
Partner locus tags
LPH37_RS01215LPH37_RS01220
Partner old locus tags
LPH37_01215LPH37_01220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227248145.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLPH37_RS01220Primary locus identifier stored in the genes table.
Old locus tagLPH37_01220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJKHM010000002.1Sequence record reported by the local genomic context database.
Genomic interval63 849-66 317 nt2 469 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span62 937-66 317 ntGCF_020982785::NZ_JAJKHM010000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020982785::NZ_JAJKHM010000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJKHM010000002.1All displayed genes belong to this local TCS context.
Neighborhood span62 937-66 317 nt3 381 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 937 nt66 317 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LPH37_RS01215GCF_020982785#LPH37_RS01215
RRNarL
62 937-63 827 nt · Reverse (-)
LPH37_RS01220GCF_020982785#LPH37_RS01220
HKClassicCurrent focus
63 849-66 317 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020561415#LI158_RS04045Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0528067
Simplified PFAM architecture for HKOC_0528067
PFAM domain coverage: 430 / 822 aa (52.3%)
1 aa822 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-160] | HisKA_3[247-308] | HATPase_c[348-440] | DUF7134[488-617]
- Domain count: 4
- Matched identifier: HKOC_0528067
- Positioned domains: DUF7134 16-160 ; HisKA_3 247-308 ; HATPase_c 348-440 ; DUF7134 488-617
Cluster members and taxonomy
Representative gene: GCF_020561415#LI158_RS04045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_020982785
AssemblyASM2098278v1 · Contighaploid
Genome composition2 272 574 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key