1 HisKA#1
177-242 aa · 66 aa · 14.6% of protein
Raw token
HisKA:177:0.000000000118:242:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LLJ07_RS07945
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_020861855
ClassHKTypeClassicLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020861855#LLJ07_RS07945Stable P2CS identifier used across views.
GenomeGCF_020861855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 451 aa (39.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa451 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
306-419 aa · 114 aa · 25.3% of protein
Raw token
HATPase_c:306:1.05e-27:419:114:109- Raw architecture: HisKA:177:0.000000000118:242:66:64#HATPase_c:306:1.05e-27:419:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020861855::NZ_JAJHZI010000002.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span371937-374149Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLLJ07_07930RefSeq proteinWP_061870848.1
Context group ID
GCF_020861855::NZ_JAJHZI010000002.1::G00016Context members
LLJ07_RS07940LLJ07_RS07945
Partner locus tags
LLJ07_RS07940LLJ07_RS07945
Partner old locus tags
LLJ07_07925LLJ07_07930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_061870848.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLLJ07_RS07945Primary locus identifier stored in the genes table.
Old locus tagLLJ07_07930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJHZI010000002.1Sequence record reported by the local genomic context database.
Genomic interval372 794-374 149 nt1 356 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span371 937-374 149 ntGCF_020861855::NZ_JAJHZI010000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020861855::NZ_JAJHZI010000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJHZI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span371 937-374 149 nt2 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
371 937 nt374 149 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LLJ07_RS07940GCF_020861855#LLJ07_RS07940
RROmpR
371 937-372 641 nt · Reverse (-)
LLJ07_RS07945GCF_020861855#LLJ07_RS07945
HKClassicCurrent focus
372 794-374 149 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001595435#APS66_RS05360Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1951217
Simplified PFAM architecture for HKOC_1951217
PFAM domain coverage: 178 / 451 aa (39.5%)
1 aa451 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[177-241] | HATPase_c[306-418]
- Domain count: 2
- Matched identifier: HKOC_1951217
- Positioned domains: HisKA 177-241 ; HATPase_c 306-418
Cluster members and taxonomy
Representative gene: GCF_001595435#APS66_RS05360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_020861855
AssemblyASM2086185v1 · Contighaploid
Genome composition2 288 004 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key